1988 Association of Mid-Continent Universities baseball tournament

The 1988 Association of Mid-Continent Universities Tournament took place from May 13 through 16. The top 4 regular season finishers of the league's seven teams met in the double-elimination tournament held in Chicago, Illinois. won the tournament for the fifth time, en route to winning the first six titles.

Format and seeding
The top two teams from each division advanced to the tournament. The top seed from each division played the second seed from the opposite division in the second round.

Tournament Most Valuable Player
Tony Floyd of Southwest Missouri State was named Tournament MVP.