1999 Australian Open – Boys' doubles

Jérôme Haehnel and Julien Jeanpierre were the defending champions, but they did not compete in the Junior's this year.

Jürgen Melzer and Kristian Pless won in the final 6–7, 6–3, 6–0, against Ladislav Chramosta and Michal Navrátil.

Seeds
• 1. 🇺🇸 Bo Hodge / 🇺🇸 David Martin (first round)

• 2. 🇨🇿 Ladislav Chramosta / 🇨🇿 Michal Navrátil (final)

• 3. 🇦🇹 Jürgen Melzer / Kristian Pless (champions)

• 4. 🇮🇹 Francesco Aldi / 🇮🇹 Stefano Mocci (semifinals)

• 5. Andrew McDade / Dirk Stegmann (first round)

• 6. 🇳🇴 Stian Boretti / 🇳🇴 Jørgen Vestli (first round)

• 7. 🇺🇸 Simone Amorico / 🇺🇸 Alex Bogomolov Jr. (first round)

• 8. 🇩🇪 Boris Bachert / 🇩🇪 Christian-Michael Straka (quarterfinals)