1999 Mid-Continent Conference baseball tournament

The 1999 Mid-Continent Conference Tournament took place from May 20 through 23. The top six regular season finishers from the regular season met in the double-elimination tournament held at J. L. Johnson Stadium on the campus of Oral Roberts University in Tulsa, Oklahoma. won the tournament for the second time.

The 1999 season was the first after most of the conference's East Division departed. IUPUI and Oakland joined the league, but the Golden Grizzlies were not eligible for postseason play.

Format and seeding
The top six finishers advanced to the tournament.

Tournament Most Valuable Player
Ryan Neill of Oral Roberts was named Tournament MVP.