1999 NCAA Division II baseball tournament

The 1999 NCAA Division II baseball tournament was the postseason tournament hosted by the NCAA to determine the national champion of baseball among its Division II members at the end of the 1999 NCAA Division II baseball season.

The final, eight-team double elimination tournament, also known as the College World Series, was played at Paterson Field in Montgomery, Alabama from May 22–29, 1999.

Chico State defeated Kennesaw State, 11–5, in the championship game to claim the Wildcats' second Division II national title and second in three seasons (1997).