1999 NCAA Division II men's soccer tournament

The 1999 NCAA Division II Men's Soccer Championship was the 28th annual tournament held by the NCAA to determine the top men's Division II college soccer program in the United States.

Undefeated defending champions Southern Connecticut State (20-0) defeated Fort Lewis, 2–1, in the tournament final, after two overtime periods. This was the second consecutive and sixth overall national title for the Owls, who were coached by Tom Lang.