2006 Mid-Eastern Athletic Conference baseball tournament

The 2006 Mid-Eastern Athletic Conference baseball tournament began on May 18 and ended on May 21 at Marty L. Miller Field, on the campus of Norfolk State University in Norfolk, Virginia. It was a six-team double elimination tournament. won the tournament, as they have done each year but one since 1999. The Wildcats claimed the Mid-Eastern Athletic Conference's automatic bid to the 2006 NCAA Division I baseball tournament.

Format and seeding
The top six finishers from the regular season were seeded one through six based on conference winning percentage only, with the top seed playing the sixth seed, second seed playing the fifth, and so on for first round matchups. The winners advanced in the winners' bracket, while first round losers played elimination games. The format meant that was left out of the field.

Bracket and results
Bracket to be added

All-Tournament Team
The following players were named to the All-Tournament Team.

Outstanding Performer
Jose Rivera Ortiz was named Tournament Outstanding Performer. Ortiz was an outfielder for Bethune-Cookman.