2006 NAIA football national championship

The 2006 NAIA football championship series concluded on December 16, 2006, with the championship game played at Jim Carroll Stadium in Savannah, Tennessee. In a battle between two unbeaten USF Cougar teams, the game was won by the Sioux Falls Cougars over the Saint Francis Cougars by a score of 23–19.

Tournament bracket

 * ** denotes double OT.