2016 US Open – Boys' doubles

Félix Auger-Aliassime and Denis Shapovalov were the defending champions, however Shapovalov withdrew due to injury. Auger-Aliassime played alongside Benjamin Sigouin, but lost in the final to Juan Carlos Aguilar and Felipe Meligeni Alves, 3–6, 6–7(4–7).

Seeds
• # 🇺🇸 Ulises Blanch / 🇯🇵 Yosuke Watanuki (first round)

• # 🇪🇪 Kenneth Raisma / Stefanos Tsitsipas (second round)

• # 🇨🇦 Félix Auger-Aliassime / 🇨🇦 Benjamin Sigouin (final)

• # 🇷🇸 Miomir Kecmanović / 🇦🇺 Alexei Popyrin (quarterfinals)

• # 🇺🇸 John McNally / 🇺🇸 J. J. Wolf (first round)

• # 🇩🇪 Marvin Möller / 🇩🇪 Louis Wessels (second round)

• # 🇫🇷 Elliot Benchetrit / 🇫🇷 Geoffrey Blancaneaux (quarterfinals)

• # 🇪🇸 Eduard Güell Bartrina / 🇦🇷 Genaro Alberto Olivieri (first round)