Comparison of nucleic acid simulation software

This is a list of notable computer programs that are used for nucleic acids simulations.

• Min – Optimization

• MD – Molecular dynamics

• MC  – Monte Carlo

• REM – Replica exchange method

• Crt – Cartesian coordinates

• Int – Internal coordinates

• Exp – Explicit water

• Imp – Implicit water

• Lig – Ligand interactions

• GPU – Hardware accelerated