DNADynamo

DNADynamo is a commercial DNA sequence analysis software package produced by Blue Tractor Software Ltd that runs on Microsoft Windows, Mac OS X and Linux It is used by molecular biologists to analyze DNA and Protein sequences. A free demo is available from the software developers website.

Features
DNADynamo is a general purpose DNA and Protein sequence analysis package that can carry out most of the functions required by a standard research molecular biology laboratory


 * DNA and Protein Sequence viewing, editing and annotating
 * Contig assembly and chromatogram editing including comparison to a reference sequence to identify mutations
 * Global Sequence alignment with ClustalW and MUSCLE and editing.
 * Select and drag Sequence alignment editing for hand made dna vs protein alignments
 * Restriction site analysis - for viewing restriction cut sites in tables and on linear and circular maps.
 * A Subcloning tool for the assembly of constructs using Restriction Sites or Gibson assembly,
 * Agarose Gel simulation.
 * Online Database searching - Search public databases at the NCBI such as Genbank and UniProt.
 * Online BLAST searches.
 * Protein analysis including estimation of Molecular Weight, Extinction Coefficient and pI.
 * PCR Primer design, including an interface to Primer3
 * 3D structure viewing via an interface to Jmol

History
DNADynamo has been developed since 2004 by BlueTractorSoftware Ltd, a software development company based in North Wales, UK