List of religious organizations based in Estonia

This is the list of religious organizations based in Estonia. The list is incomplete.

Christian organizations

 * Estonian Apostolic Orthodox Church
 * Estonian Evangelical Lutheran Church
 * Estonian Methodist Church
 * Estonian Orthodox Church of the Moscow Patriarchate
 * Union of Free Evangelical and Baptist Churches of Estonia

Non-Christian organizations

 * Estonian Islamic Congregation
 * Maavalla Koda
 * Emujärve Koda
 * Härjapea Koda
 * Emajõe Koda
 * Maausuliste Saarepealne Koda