Mission San Juan Bautista (disambiguation)

Mission San Juan Bautista may refer to any of the following missions, all of which are named for John the Baptist:
 * Mission San Juan Bautista, in San Juan Bautista, California, United States
 * Misión San Juan Bautista Malibat, near Loreto, Baja California Sur, Mexico
 * Mission San Juan Bautista (Mexico), in Guerrero, Coahuila, Mexico