Stony Run

Stony Run may refer to:


 * Stony Run (Baltimore), a stream in Baltimore, Maryland
 * Stony Run (Buffalo Creek), a stream in Union County, Pennsylvania
 * Stony Run (Little Catawissa Creek), a stream in Columbia and Schuylkill Counties Pennsylvania
 * Stony Run (Minnesota), a stream in Big Stone County, Minnesota
 * Stony Run, Pennsylvania
 * Stony Run Township, Yellow Medicine County, Minnesota
 * Stony Run (Anderson Creek tributary), a stream in Clearfield County, Pennsylvania