Talk:List of human cell types/Archive 2

Bot? for importing known biomarks
would it make sense to make a bot to automatically import known biomarkers from the HubMap project? Claes Lindhardt (talk) 11:25, 28 July 2023 (UTC)


 * I took found inspiration in: WikiProject Molecular Biology/Molecular and Cell Biology/Human protein-coding genes
 * then I wrote to the hubmap people with some friends, and they were kind to refer me to: https://ccf-ontology.hubmapconsortium.org/v2.3.0/ccf-asctb-all.json
 * (documentation of the JSON file from HUBMap: https://mmpyikxkcp.us-east-2.awsapprunner.com/#/schemas/RowData)
 * and drafted some code togehter with that we Mas Klein, that we could potentially use to update parts of the table with: https://github.com/claeslindhardt/CellFamilyTree Claes Lindhardt (talk) 17:40, 19 December 2023 (UTC)
 * Right now, it seems like there is about 17 000 human cells in the hub-map data base. If we want all of them to be on a wikipedia. We will likely have to split them into 4 tables or so? to avoid the list beeing difficult for some networks/computer to open and view? Claes Lindhardt (talk) 11:33, 20 December 2023 (UTC)
 * It seems that it pulls a lot of cells(2829 types), which we does not have yet. But it only takes thier name location and biomarks, or? so we still need predecessors and offspring? and a good way to merge it with the existing table? Sergioo Hernandeez (talk) 14:27, 20 December 2023 (UTC)
 * It seems that there is a lot of dublicates in there, will try to modify the code so that it sorts everything alphabetically by default. So that dublicates are quick to remove Claes Lindhardt (talk) 14:38, 20 December 2023 (UTC)

I tried the code, 

Here is an updated version without the dublicates, the newst code is currently not on the main branch: 

Now we have something which can merge the things from hubMap and wiki, but it still does not preserve hyperlinks and merging of dublicates still have to happen manuelly: