User:北雪/Books/Computational Biology

Computational Biology

 * Sequencing
 * DNA sequencing
 * Sanger sequencing
 * Illumina dye sequencing
 * Single molecule real time sequencing


 * Sequence Alignment
 * Sequence alignment
 * Sequence homology
 * Gap penalty
 * Needleman–Wunsch algorithm
 * Smith–Waterman algorithm
 * Substitution matrix
 * Models of DNA evolution
 * BLOSUM
 * Point accepted mutation
 * FASTA
 * BLAST
 * Multiple sequence alignment
 * FASTA format


 * Computational Molecular Evolution
 * Tree of life (biology)
 * Phylogenetic tree
 * Outgroup (cladistics)
 * Monophyly
 * Paraphyly
 * Polyphyly
 * Dendrogram
 * Cladogram
 * Chronogram
 * Newick format
 * UPGMA
 * Neighbor joining
 * Maximum parsimony (phylogenetics)
 * Bayesian inference
 * Bootstrapping (statistics)
 * Genetic divergence
 * Adaptation
 * Ancestral sequence reconstruction


 * Genome Assembly
 * Sequence assembly
 * Contig
 * Scaffolding (bioinformatics)
 * Coverage (genetics)
 * N50, L50, and related statistics
 * Burrows–Wheeler transform
 * FM-index
 * Suffix array
 * De novo sequence assemblers
 * De Bruijn graph
 * K-mer
 * Eulerian path


 * Genome Annotation
 * DNA annotation
 * Gene prediction
 * Gene structure
 * Ab initio
 * Reading frame
 * Codon usage bias
 * Sequence logo
 * Position weight matrix
 * Functional genomics
 * SNP annotation
 * Pseudogene
 * Non-coding DNA
 * General feature format
 * Gene transfer format