User:Bci2/Books/Molecular Modeling and Dynamics

Modeling Methods, Molecular Dynamics, Computational Models and Computer Simulations of Molecular Systems

 * Copyright@2009 Bci2, Edited and originated by Bci2- with several contributors listed before the License Statement.

Molecular Modeling Applications to Complex Biomolecules

 * Molecular Modeling Methods
 * Molecular Modeling
 * Quantum field theory
 * Local quantum field theory
 * Physical chemistry
 * Chemical physics
 * Computational chemistry
 * n-body problem
 * Many-body problem(quantum)
 * Hartree–Fock method
 * Mean field theory
 * Landau theory
 * Flory–Huggins solution theory
 * Scheutjens-Fleer theory
 * Molecular graphics
 * VRML
 * Molecular design software
 * Computational chemistry


 * Theoretical Quantum Chemistry
 * Quantum chemistry
 * Molecular orbital theory
 * Linear combination of atomic orbitals molecular orbital method,LCAO MO
 * Hückel method,HMO
 * Extended Huckel method,EHMO
 * Generalized valence bond
 * Density functional theory,DFT
 * Møller–Plesset perturbation theory
 * List of quantum chemistry and solid state physics software
 * International Academy of Quantum Molecular Science


 * Molecular Dynamics, Theories and Computational Methods
 * Classical mechanics
 * Newton's laws of motion
 * Analytical dynamics
 * Force Fields
 * Molecular mechanics
 * Molecular dynamics
 * NAnoscale Molecular Dynamics
 * CHARMM
 * Charm++
 * Assisted Model Building with Energy Refinement
 * Optimized Potentials for Liquid Simulations
 * Visual Molecular Dynamics,VMD
 * Abalone (molecular mechanics)
 * Statistical mechanics
 * Statistical field theory
 * Mathematical chemistry
 * Monte Carlo method
 * Quantum Monte Carlo
 * Dynamics of Markovian particles


 * Molecular Modeling Applications to Complex Biomolecules
 * Protein structure prediction
 * Protein folding
 * Folding@home,4p5 Peta-flop Distrib, Computing of Protein Folding Project
 * Protein design
 * Homology modeling
 * Loop modeling
 * MODELLER
 * Molecular models of DNA
 * Comparison of nucleic acid simulation software


 * Molecular Networks and Complex Molecule Dynamics
 * Metabolic networks
 * Topological dynamics
 * Protein-protein interactions
 * Protein-protein interaction predictions
 * Proteomics
 * List of protein structure prediction software
 * Protein-DNA interaction site predictor
 * Molecular models of DNA
 * DNA nanotechnology
 * Molecular self-assembly
 * Interactome
 * Cell signaling
 * Molecular evolution
 * Molecular phylogenetics
 * Computational phylogenetics