User:Chaotic Enby/SAR supergroup

SAR or Harosa is a highly diverse clade of eukaryotes, often considered a supergroup, that includes stramenopiles (heterokonts), alveolates, and rhizarians. It is a node-based taxon, including all descendants of the three groups' last common ancestor, and comprises most of the now-rejected Chromalveolata. Their sister group has been found to be telonemids, with which they make up the TSAR clade.

Etymology
The name SAR is an acronym derived from the first letters of its three constituent clades; it has been alternatively spelled "RAS". The term "Harosa" (at the subkingdom level) has also been used, with Stramenopiles replaced by its synonym Heterokonta in this variant of the acronym.

History of discovery
Before the discovery of the SAR supergroup, stramenopiles and alveolates were classified in the supergroup Chromalveolata alongside haptophytes and cryptomonads, being believed to have acquired plastids through secondary endosymbiosis of red algae through a common ancestor. Meanwhile, Rhizaria was traditionally considered to be a separate supergroup. More recent phylogenetic studies confirmed that stramenopiles and alveolates diverged with rhizarians as part of the SAR lineage. This clade has been found by later phylogenomic studies to be robustly characterized compared to other supergroups.

This groups excludes haptophytes and cryptomonads, hypothesized to have acquired plastids in separate endosymbiosis events, leading Okamoto et al. (2009) to propose the clade Hacrobia to accommodate them.

Characteristics
Owing to the clade's discovery through phylogenomics, there are no known synapomorphies uniting its various members. This was already the case for its subclade Rhizaria, established earlier through similar means. On the other hand, Stramenopiles is well-defined morphologically, characterized by an anterior flagellum with tripartite bristles (mastigonemes), while Alveolata is united by the presence of cortical alveoli.

Nonetheless, studies of telonemids, believed to be the sister group to SAR, have revealed characteristics such as tripartite hair and peripheral vacuoles, potentially homologous to similar structures in stramenopiles and alveolates. This brings into light the possibility of these structures being ancestrally shared by the clade, with cortical alveoli originating from peripheral vacuoles under this hypothesis.

Photosynthesis has been argued to have arisen independently across various stramenopiles and alveolates lineages through secondary or higher-order endosymbiosis events, acquiring plastids of red algal origin. Nonetheless, other studies point to a common endosymbiotic origin for these plastids. Meanwhile, chlorarachniophyte rhizarians captured plastids from green algae in a separate event, retaining vestigial nucleomorphs.

Diversity
The SAR supergroup encompasses a variety of morphologies and ecological niches, from microscopic zoo- and phytoplankton to massive kelp forests. The group includes both photosynthetic and non-photosynthetic forms.

It has been estimated that SAR encompasses up to half of all eukaryotic diversity.

Internal phylogeny
A 2021 analysis places Alveolata and Stramenopiles in Halvaria, as sister to Rhizaria.

Evolution
[discuss external relationships and shared traits with other eukaryote lineages]

[molecular clock, cite and 10.1101/cshperspect.a016139]

[talk about the fossil record]