User:Chunlab/sandbox

[http://Chunlab.com Chunlab, Inc. was founded by Prof. Jongsik Chun at Seoul National University in 2009 with the mission to develop bioinformatics solutions for microbial genomics, functional genomics, and metagenomics. The Chunlab, Inc. is the world's leading specialist in bioinformatics solutions for Next Generation Sequencing (Roche 454 & Illumina GA). The company provides bioinformatics analysis service for Next Generation Sequencing data from which microbial components are elucidated by the state-of-art bioinformatic algorithms and statistical analysis.Bioinformatics services for Microbial genomics and transcriptomics are available as well.Several manuscripts have been published with technology and service provided by Chunlab, Inc.]

Microbial Community Analysis
ChunLab, Inc. developed the EzTaxon database to identify microbial species. With the aid of this specific database, our lab can analyze microbial communities more accurately and efficiently. Along with this database, ChunLab, Inc. has also developed software (CLcommunity) specifically for the analysis of genomic properties in microbial communities.

Whole Genome
ChunLab, Inc. provides data with high quality, throughput, and accuracy thorugh its own analysis pipeline and software. CLgenomics is software specifically designed by ChunLab, Inc. for analyzing microbial genomes. It provides specific genome data, various statistical data, and comparative genome data.

RNA Sequencing
ChunLab provides optimal sequencing result based on Illumina platform. Also, CLRNASeq™, ChunLab’s proprietary viewer for RNA-Seq, make the analysis possible in which users can browse mapping data and perform DEG analysis and clustering for transcriptome data.

EZTaxon-e
The EzTaxon-e database is an extension of the original EzTaxon database (Chun et al., 2007) which has been cited over 1,240 times. It now contains comprehensive 16S rRNA gene sequences of taxa with valid names as well as sequences of uncultured taxa.

EZGenome
EzGenome database contains comprehensive information about manually curated genome projects of prokaryotes (Archaea and Bacteria).Each genome has been identified at the species/subspecies level using 16S rRNA sequence (through EzTaxon-e database) and comparative genomics (through average nucleotide identity), allowing the accurate placement of all genomes on to the unified taxonomic hierarchy of EzTaxon-e database. All genomes are complied, annotated and downloadable as CLgenomics™ data file. CLgenomics™ program is freely available here for academic and non-profit organizations. The database will be updated biweekly.