User:Daniel Mietchen/Publications

Below is a list of my publications in scholarly journals, sorted in reverse chronological order, along with links to Wikipedia articles on related subjects. The list is manually curated, so usually incomplete. A more complete list can be found at my Scholia profile.

See also my open-access pledge, my ORCID record, my Google Scholar profile as well as my contributions at Zenodo, arXiv or Nature Precedings and videos on Vimeo. For a biographical sketch, see here.

General keywords: Biophysics, Magnetic Resonance Imaging, Biodiversity, Cognitive evolution, Vocal learning, Palaeopathology, Cryobiology, Embryology, Open research, Academic publishing, Data publishing, Wikis, Markup

Specific keywords are given along with the individual articles
 * data management plan, research data management, data discovery
 * data sharing, public health emergency
 * Wikidata, LaTeX, bibliometrics, scientometrics, Python
 * data publishing, biodiversity data, biodiversity, open research data, open data, data repository, data citation
 * preprints, life sciences, science policy, ASAPbio
 * Virtual Research Environment, data infrastructure, open science, Horizon 2020, science policy
 * computational biology, curriculum development
 * data sharing, biodiversity, science policy, Framework Programmes for Research and Technological Development
 * Zika virus, Zika fever, Zika virus outbreak (2015–present), drug discovery, open science, Dengue fever, Ebola virus
 * Wikidata, open research, open science, peer review, virtual research environment, research funding, Horizon 2020, citizen science
 * Virtual Research Environment, data infrastructure, open science, Horizon 2020, science policy
 * computational biology, curriculum development
 * data sharing, biodiversity, science policy, Framework Programmes for Research and Technological Development
 * Zika virus, Zika fever, Zika virus outbreak (2015–present), drug discovery, open science, Dengue fever, Ebola virus
 * Wikidata, open research, open science, peer review, virtual research environment, research funding, Horizon 2020, citizen science
 * data sharing, biodiversity, science policy, Framework Programmes for Research and Technological Development
 * Zika virus, Zika fever, Zika virus outbreak (2015–present), drug discovery, open science, Dengue fever, Ebola virus
 * Wikidata, open research, open science, peer review, virtual research environment, research funding, Horizon 2020, citizen science
 * Wikidata, open research, open science, peer review, virtual research environment, research funding, Horizon 2020, citizen science
 * Wikidata, open research, open science, peer review, virtual research environment, research funding, Horizon 2020, citizen science


 * open research, open science, peer review, academic journal, research funding, collaborative writing, sustainable development
 * open research, open science, peer review, academic journal, research funding, collaborative writing, sustainable development


 * Mietchen D, McEntyre J, Beck J, Maloney C; Force11 Data Citation Implementation Group (2015) Adapting JATS to support data citation. In: Journal Article Tag Suite Conference (JATS-Con) Proceedings 2015 [Internet]. Bethesda (MD): National Center for Biotechnology Information (US). Available from: http://www.ncbi.nlm.nih.gov/books/NBK280240/
 * JATS, data citation, open data, PubMed Central


 * Beck J, Chodacki J, Eaton A, Evans M, Gatti R, Gilbert J, Harrison M, Maloney C, Mietchen D, Mowlam T; JATS4R Working Group (2015) Improving the reusability of JATS. In: Journal Article Tag Suite Conference (JATS-Con) Proceedings 2015 [Internet]. Bethesda (MD): National Center for Biotechnology Information (US). Available from: http://www.ncbi.nlm.nih.gov/books/NBK279901/
 * XML, JATS, PubMed Central, Open access, open licensing, Wikimedia Commons, equation, Open Access Media Importer
 * research funding, open science, peer review
 * hackathon, biodiversity, taxonomy, ontologies
 * Eupolybothrus cavernicolus, taxonomy, data publishing, morphology, transcriptome, µCT, DNA barcoding, speleology
 * Mietchen, D.; Maloney, C.; and Moskopp, N. D. (2013) Inconsistent XML as a Barrier to Reuse of Open Access Content. Journal Article Tag Suite Conference (JATS-Con) Proceedings 2013.
 * XML, JATS, PubMed Central, Open access, open licensing, Wikimedia Commons, media type, Open Access Media Importer
 * computational biology, Wikipedia, International Society for Computational Biology, WikiProject Computational Biology, ISCB competition announcement 2013
 * biodiversity, open data, data publishing, academic publishing, open access, collaborative authoring, peer review
 * taxonomy, identification keys, 3D imaging, Portable Document Format
 * open access journals, scholarly societies, hymenoptera
 * Fitch WT, Mietchen D (2013) Convergence and deep homology in the evolution of spoken language. In: Bolhuis JJ, Everaert M, editors. Birdsong, speech, and language: exploring the evolution of mind and brain. Cambridge, MA: MIT Press. pp. 45–62.
 * vocal learning, speech, vocal production, vocal tract, deep homology, birdsong, FOXP2
 * vocal learning, speech, vocal production, vocal tract, Elephas maximus, Koshik, Batyr, proboscis
 * Computational biology, review articles, Wikipedia, open access, Creative Commons licenses
 * Creative Commons licenses, non-commercial, biodiversity
 * wikis, science communication, scientific method, open research
 * peer review, public peer review, open peer review
 * wikis, version control, biodiversity
 * multimedia, academic publishing, Portable Document Format, supplementary materials, brain morphometry, Doppler ultrasound, sleep apnoea,
 * brain morphometry, brain evolution, brain development, brain disease, brain aging
 * Magnetic resonance microscopy, chemical-shift imaging, cold hardiness, Epiblema scudderiana, Eurosta solidaginis, Solidago, supercooling, glycerol, sorbitol
 * Magnetic resonance microscopy, permineralization, diagenesis, biomineralization, crystal water, Magic angle spinning, Atocetus, Gonioteuthis, Belemnitella, Araucaria, Pararaucaria patagonica, Isselicrinus buchii
 * emotion, personality, ECG
 * music perception, ERP, musical syntax, auditory perception, auditory system, auditory processing, sensory information,
 * Magnetic resonance microscopy, embryonic development, cell division, fate map, gastrulation, oocyte, Xenopus laevis
 * Magnetic resonance spectroscopy, localized spectroscopy, Berenil, oocyte, Xenopus laevis
 * Magnetic resonance microscopy, biomineralization, Lubomirskia baicalensis
 * Magnetic field, gastrulation, oocyte, Xenopus laevis
 * peer review, single-blind peer review, double-blind peer review, researchers
 * Magnetic resonance microscopy, palaeopathology, Gonioteuthis quadrata, Neoclavibelus subclavatus, Hibolithes jaculoides, biomineralization
 * postdoc, researchers, Torsten Wiesel, Eurodoc
 * researchers, science policy, Eurodoc, European Research Area
 * Dielectric spectroscopy, electrorotation, Chlamydomonas nivalis, automation
 * brain morphometry, brain evolution, brain development, brain disease, brain aging
 * Magnetic resonance microscopy, chemical-shift imaging, cold hardiness, Epiblema scudderiana, Eurosta solidaginis, Solidago, supercooling, glycerol, sorbitol
 * Magnetic resonance microscopy, permineralization, diagenesis, biomineralization, crystal water, Magic angle spinning, Atocetus, Gonioteuthis, Belemnitella, Araucaria, Pararaucaria patagonica, Isselicrinus buchii
 * emotion, personality, ECG
 * music perception, ERP, musical syntax, auditory perception, auditory system, auditory processing, sensory information,
 * Magnetic resonance microscopy, embryonic development, cell division, fate map, gastrulation, oocyte, Xenopus laevis
 * Magnetic resonance spectroscopy, localized spectroscopy, Berenil, oocyte, Xenopus laevis
 * Magnetic resonance microscopy, biomineralization, Lubomirskia baicalensis
 * Magnetic field, gastrulation, oocyte, Xenopus laevis
 * peer review, single-blind peer review, double-blind peer review, researchers
 * Magnetic resonance microscopy, palaeopathology, Gonioteuthis quadrata, Neoclavibelus subclavatus, Hibolithes jaculoides, biomineralization
 * postdoc, researchers, Torsten Wiesel, Eurodoc
 * researchers, science policy, Eurodoc, European Research Area
 * Dielectric spectroscopy, electrorotation, Chlamydomonas nivalis, automation
 * Magnetic resonance microscopy, biomineralization, Lubomirskia baicalensis
 * Magnetic field, gastrulation, oocyte, Xenopus laevis
 * peer review, single-blind peer review, double-blind peer review, researchers
 * Magnetic resonance microscopy, palaeopathology, Gonioteuthis quadrata, Neoclavibelus subclavatus, Hibolithes jaculoides, biomineralization
 * postdoc, researchers, Torsten Wiesel, Eurodoc
 * researchers, science policy, Eurodoc, European Research Area
 * Dielectric spectroscopy, electrorotation, Chlamydomonas nivalis, automation
 * Magnetic resonance microscopy, palaeopathology, Gonioteuthis quadrata, Neoclavibelus subclavatus, Hibolithes jaculoides, biomineralization
 * postdoc, researchers, Torsten Wiesel, Eurodoc
 * researchers, science policy, Eurodoc, European Research Area
 * Dielectric spectroscopy, electrorotation, Chlamydomonas nivalis, automation
 * researchers, science policy, Eurodoc, European Research Area
 * Dielectric spectroscopy, electrorotation, Chlamydomonas nivalis, automation
 * Dielectric spectroscopy, electrorotation, Chlamydomonas nivalis, automation