User:Daniel Mietchen/Talks/COASP 2014

Open Access as part of the wider open ecosystem

Watch the video

History

 * Some previous talks
 * in this room (2012)
 * at COASP: 2010/ 2012
 * Future of publishing (2012)
 * JATS-Con (2014)

Warmup: show of hands

 * Number of people in the audience?
 * 86
 * Who has ever written a research article that finally got published?
 * 60
 * Who has ever written a research article that finally got published under an open license?
 * 13
 * Who has ever reviewed a research article?
 * 24
 * Who has ever signed their review of a research article?
 * 6
 * Who has ever used research datasets or scientific software published by others?
 * 33
 * Who has ever contributed to research datasets or scientific software published under an open license?
 * 8.5
 * Who has ever got scooped?
 * 2
 * Who has ever read a Wikipedia article (in any language)?
 * 86
 * Who has ever contributed to a Wikipedia article (in any language)?
 * 22

Format

 * HTML
 * Wiki
 * PDF
 * XML

Quotes

 * Background music

Reality today

 * A figure from a recent paper: 


 * Two videos providing the basis for an article but not published along with it.

Stats

 * Altmetrics inspiration
 * Start GLAMorous: 1 2
 * Wikipedia Cite-o-Meter
 * English Wikipedia
 * Vietnamese Wikipedia
 * PLOS
 * Elsevier
 * Wikimedia Commons
 * We're working on identifiers
 * Check GLAMorous: Open access (publishing)
 * BaGLAMa: Open access

Open Access Media Importer
An example of open science - from the grant proposal to all outputs.
 * commons:User:Open Access Media Importer Bot (OAMI)
 * Check GLAMorous OAMI
 * BaGLAMa
 * Expansion to full-text import
 * Wikipedia Zero
 * Wikisource is included
 * SciELO content is available in JATS, soon in PMC
 * Problem: Inconsistent XML as a Barrier to Reuse of Open Access Content
 * JATS4R is trying to address this

How things could be
A specification anyone can edit:

Dynamics

 * Research is a process. The scientific journal of the future provides a platform for continuous and rapid publishing of workflows and other information pertaining to a research project, and for updating any such content by its original authors or collaboratively by relevant communities. Eventually, all scientific records should have a public version history or a public justification for not having one.
 * Research cycle.png
 * example
 * Updates automatically (interview)
 * Version of record
 * Ten Simple Rules for Better Figures
 * Composite bitmap figures inhibit reuse
 * kinds of reuse
 * Editable format (SVG; blog post on the topic)
 * Data and code on GitHub under open licenses
 * PLOS Computational Biology Topic Pages (list)
 * The workflows include writing of research documents, as piloted by the Biodiversity Data Journal.

Scope

 * Data come in many different formats. The scientific journal of the future interoperates with databases and ontologies by way of open standards and concentrates on the contextualization of knowledge newly acquired through research, without limiting its scope in terms of topic or methodology.
 * Eupolybothrus cavernicolus male paratype.jpg of the centipede Eupolybothrus cavernicolus, a species described with its full transcriptome, micro CT and DNA barcoding, in addition to a morphological description.]]
 * another example: citizen science

Access

 * Free access to scientific knowledge, and permissions to re-use and re-purpose it, are an invaluable source for research, innovation and education. The scientific journal of the future provides legally and technically barrier-free access to its contents, along with options for re-use and re-purposing that are stated clearly for both humans and machines.
 * "Academic publishing is no guarantee of anything, except possibly the paywalled obsolescence of your work." (WebCite copy)
 * Xanthichthys ringens - pone.0010676.g191.png'' is sourced from an open-access scholarly article licensed for re-use (details). ]]
 * Open Access Media Importer Bot (ASAP award winner)
 * Leibniz @Wikimedia
 * Open Access @Wikimedia

Replicability

 * Open access to all relevant core elements of a publication facilitates the verification and subsequent re-use of published content. The scientific journal of the future requires the publication of detailed methodologies &mdash; including all data and code &mdash; that form the basis of any research project.
 * NIH plans to enhance reproducibility

Review

 * The critical, transparent and impartial examination of information submitted by the professional community enhances the quality of publications. The scientific journal of the future supports post-publication peer review, and qualified reviews of submitted content shall always be made public.
 * example
 * public peer review
 * public review of grant proposals

Presentation

 * Digitization opens up new opportunities to provide content, such as through semantic and multimedia enrichment. The scientific journal of the future adheres to open Web standards and creates a framework in which the technological possibilities of digital media can be exploited by authors, readers and machines alike, and content remains continuously linkable.
 * Demo of interactive taxonomic paper from ZooKeys.ogv. Courtesy of Rod Page.]].
 * Interactive presentation using Lens
 * Composition of plates on the fly (as opposed to static composite figures)

Transparency

 * Disclosure of conflicts of interest creates transparency. The scientific journal of the future promotes transparency by requiring its editorial board, the editors and the authors to disclose both existing and potential conflicts of interest with respect to a publication and to make explicit their contributions to any publication.

Sustainability

 * Resources are limited. Ecological considerations are reflected in the design and production of the scientific journal of the future.

Flexibility

 * Innovation is stifled by inflexible rules. Exceptions to the above rules are possible if justified in public.
 * examples

About
This page belongs to a super-outstanding talk given on September 19, 2014, as part of OASPA's 2014 conference (COASP 2014) at the UNESCO in Paris.

Contact

 * Institutional
 * @EvoMRI on Twitter
 * Wikipedia talk page
 * Wikipedia email