User:Daniel Mietchen/Talks/Wikipedia for Health/Safety Research and Data 2015

About
This page belongs to a talk given as part of the Wikipedia for Health/Safety Research and Data (WHSRD) in Washington, DC.

Title
Wikimedia and scholarly communication

Abstract
There are multiple ways in which Wikimedia platforms interact with scholarly communications. This talk will zoom in to the interface of the two, both on a technical and a community level. It will highlight how content finds its way from scholarly communications into Wikimedia projects and sometimes vice versa, how data, metadata, software, infrastructure and the workflows of people and bots fit into the picture.

A video recording of a similar talk given at CERN some years back is available via https://en.wikipedia.org/wiki/User:Daniel_Mietchen/Talks/CERN_2012.

Formats

 * wiki
 * HTML: desktop · mobile
 * PDF
 * XML
 * Wikiwand

Wikimedia about publishing

 * Publishing
 * Academic journal
 * WikiProject Academic Journals
 * Wikisource:WikiProject Academic Papers
 * Wikimedia Commons Category:Open access (publishing)
 * Wikidata:WikiProject Source MetaData
 * Bibliographic metadata for scholarly articles in Wikidata
 * Wikidata:WikiProject Wikidata for research
 * Wikidata:WikiProject Periodicals
 * Wikidata:WikiProject Books
 * Wiki Loves Libraries
 * Wikimedians in Residence
 * incl. GLAM/National Library of Scotland and Royal Society of Chemistry

Wikimedia and Open Access

 * Overview
 * Wikipedia article: Open access
 * Exists in multiple languages
 * Associated Wikidata item
 * Multiple Wikimedia entities have signed the Berlin Declaration on Open Access to Knowledge in the Sciences and Humanities
 * WikiProject Open Access
 * Open Access Signalling project
 * Open-access policy
 * Blog post announcing the policy
 * Signpost article about the policy
 * highlights differences to typical Open-access policies:
 * It covers not just publications, but associated data, software and multimedia;
 * It stresses the importance of open licensing, which facilitates and broadens the scope of reuse;
 * It is itself available under an open license, so it can easily be adapted (e.g. translated);
 * It avoids embargo periods (which most other policies allow for), and instead allows for limited exceptions;
 * The exceptions are to be documented in public, which helps to collect data on the necessity for exceptions and can inform later refinements of the policy.
 * The actual policy
 * FAQ on the policy
 * Licensing is key throughout

Wikimedia and subscription access

 * The Wikipedia Library

Publishing about Wikimedia

 * example

Wikimedia about publications about Wikimedia

 * Research Newsletter
 * e.g. Amplifying the Impact of Open Access: Wikipedia and the Diffusion of Science

Journal ↔ wiki publishing

 * Wikiversity Journal of Medicine
 * Open Access to a High-Quality, Impartial, Point-of-Care Medical Summary Would Save Lives: Why Does It Not Exist?
 * RIO Journal

Publishing beyond papers

 * Completely natural on Wikimedia platforms
 * e.g. WMF Grants and grant schemes by various chapters
 * example project: Open Access Media Importer
 * Completely unnatural for academics
 * New journal to cover research from all steps of the research cycle
 * RIO Journal

Citing journals in wiki

 * WP:V &mdash; verifiability
 * Wikipedia Cite-o-Meter
 * English Wikipedia
 * Vietnamese Wikipedia
 * PLOS
 * Elsevier
 * Wikimedia Commons
 * Journals cited by Wikipedia
 * Halfaker, Aaron; Taraborelli, Dario (2015): Scholarly article citations in Wikipedia. figshare. Retrieved 14:22, Feb 27, 2015 (GMT)
 * CrossRef DOI Events for Wikimedia
 * Introductory blog post
 * CrossRef Labs DOI Chronograph
 * Introductory blog post

Citing wiki in journals

 * examples

Reusing journal materials in wiki

 * recent uploads
 * GLAMorous
 * BaGLAMa

Open Access Media Importer
An example of open science - from the grant proposal to all outputs.
 * commons:User:Open Access Media Importer Bot (OAMI)
 * imports audio and video files from openly licensed articles in PubMed Central (PMC)
 * Stats:
 * GLAMorous OAMI
 * BaGLAMa
 * Expansion to full-text import
 * deeplinking
 * Wikipedia Zero
 * Wikisource is included

Reusing wiki materials in journal

 * "image from Wikipedia"
 * "image from Wikimedia" (Commons)
 * "image source: Wikipedia"
 * "image source: Wikimedia" (Commons)
 * Springer's misappropriation of Wikimedia content "the tip of the iceberg"

Translations

 * e.g. Ebola translation task force

Curating via Wikimedia

 * Mechanical Curator
 * Rfam/Pfam databases
 * Gene Wiki
 * moving to Wikidata
 * VIAF
 * Integration of VIAF identifiers into Wikidata
 * VIAF now links back to Wikidata
 * ChemSpider

Role of repositories

 * Interoperability
 * is key to reuse
 * requires standardization

JATS

 * JATS is the de-facto standard for exchanging journal article content in a machine-readable fashion
 * used for articles ingested into PubMed Central
 * SciELO content is available in JATS, soon in PMC
 * Optical Society of America, Copernicus, BioMed Central, Nature Publishing Group and others moved to JATS, even though not all of their content is going to PMC
 * NASA and other US Federal Agencies are planning to build their public access policies around PMC
 * Problem: Inconsistent XML as a Barrier to Reuse of Open Access Content
 * JATS4R is trying to address this
 * Improving the reusability of JATS
 * Now also with data citation

Visualizations

 * Listen to Wikipedia
 * Wikipulse
 * Map of recent edits
 * Wikistream
 * Wikimedia project growth animation
 * Wikipedia live monitor
 * Manypedia
 * SuggestBot
 * Twikipedia
 * Wikidata lists
 * e.g. Taxon items with audio
 * Web Observatory

{ "version": 2, "width": 400, "height": 200, "padding": {"top": 10, "left": 30, "bottom": 30, "right": 10}, "data": [ {     "name": "table", "values": [ {"x": 1, "y": 100}, {"x": 2,  "y": 55}, {"x": 3, "y": 43}, {"x": 4,  "y": 91}, {"x": 5, "y": 81}, {"x": 6,  "y": 53}, {"x": 7, "y": 19}, {"x": 8,  "y": 87}, {"x": 9, "y": 52}, {"x": 10, "y": 48}, {"x": 11, "y": 24}, {"x": 12, "y": 49}, {"x": 13, "y": 87}, {"x": 14, "y": 66}, {"x": 15, "y": 17}, {"x": 16, "y": 27}, {"x": 17, "y": 68}, {"x": 18, "y": 16}, {"x": 19, "y": 49}, {"x": 20, "y": 15} ]   }  ],  "scales": [ {     "name": "x", "type": "ordinal", "range": "width", "domain": {"data": "table", "field": "x"} },   {      "name": "y", "range": "height", "nice": true, "domain": {"data": "table", "field": "y"} } ],  "axes": [ {"type": "x", "scale": "x"}, {"type": "y", "scale": "y"} ], "marks": [ {     "type": "rect", "from": {"data": "table"}, "properties": { "enter": { "x": {"scale": "x", "field": "x"}, "width": {"scale": "x", "band": true, "offset": -1}, "y": {"scale": "y", "field": "y"}, "y2": {"scale": "y", "value": 0} },       "update": { "fill": {"value": "steelblue"} },       "hover": { "fill": {"value": "red"} }     }    }  ] }

Wikidata for research

 * Listen to Wikidata
 * Wikidata presentations from WikiCon USA
 * An ambitious Wikidata tutorial
 * Open Biomedial Knowledge: Wikipedia, Wikidata and Beyond
 * Items
 * showcase items
 * Properties
 * Medical properties
 * NIH properties
 * Astronomical objects properties
 * Chemical compound properties
 * Authority control properties
 * WikiProjects
 * Science Wikiprojects
 * Bots
 * Tools
 * Reasonator
 * Charles Darwin, FRS
 * Wikidata lists
 * Species of Trigonopterus
 * Items with DOIs
 * Sample citations
 * Items with ZooBank publication ID
 * Items with ORCID
 * &mdash; check history
 * additional tabs
 * Property suggestor
 * Wikidata game
 * Templates
 * Modèle:Infobox Fromage
 * Category:Modules using data from Wikidata
 * Module:Taxobox
 * WikiProjects
 * Science WikiProjects
 * WikiProject Wikidata for research
 * EU grant proposal
 * Follow-up by Haifa University
 * Wikidata:WikiProject Source MetaData
 * Signalling OA-ness
 * Wikidata:Data access
 * SPARQL endpoints
 * SPARQL endpoints

Contact

 * @EvoMRI
 * Wikipedia talk page
 * Wikipedia email