User:Hans Genten/Eukaryotes

System by Adl et al. 2019

Reference:

EUKARYOTA [EUKARYA]

Incertae sedis Amorphea: Obazoa Brown et al. 2013

 * Apusomonadida Karpov & Mylnikov 1989
 * Breviatea Cavalier-Smith & 2004
 * Opisthokonta Cavalier-Smith 1987, emend. Adl et al. 2005
 * Holozoa Lang et al. 2002
 * Incertae sedis Holozoa: Corallochytrium limacisporum Raghu-Kumar 1987
 * Incertae sedis Holozoa: Syssomonas Tikhonenkov, Hehenberger, Mylnikov & Keeling 2017
 * Ichthyosporea Cavalier-Smith 1998 [Mesomycetozoea Mendoza et al. 2002 ]


 * Filasterea Shalchian-Tabrizi et al. 2008
 * Choanozoa Brunet & King 2017 [Choanozoa Cavalier-Smith et al. 1991 ]
 * Choanoflagellata Kent 1880–1882 [Craspedomonadina Stein 1878 ; Craspedomonadaceae Senn 1900 ; Craspedophyceae Chadefaud 1960 ; Craspédomonadophycidées Bourrelly 1968 ; Craspedomonadophyceae Hibberd 1976 ; Choanomonadea Krylov et al. 1980 ; Choanoflagelliida Lee, Hutner & Bovee 1985 ; Choanoflagellatea Cavalier-Smith 1997 emend. Cavalier-Smith 1998 ; Choanomonada Adl et al. 2005 ]


 * Metazoa Haeckel 1874, emend. Adl et al. 2005 [Animalia Linnaeus 1758 ; Eumetazoa Bütschli 1910 ]

<!-- ****** Opisthosporidia Karpov, Aleoshin & Mikhailov 2014
 * Nucletmycea Brown et al. 2009 [=Holomycota Liu et al. 2009 ]
 * Incertae sedis Nucletmycea: Sanchytriacea Karpov & Aleoshin 2017
 * Rotosphaerida Rainer 1968 [junior syn. Cristidiscoidida Page 1987, Cavalier-Smith 1993, 1998 ; Nucleariidae Patterson 1983, 1999 ]
 * Fungi R.T. Moore 1980
 * Aphelidea Gromov 2000 [=Aphelidida Gromov 2000 ; =Aphelidiomyceta Tedersoo et al. 2018 ; =Aphelidiomycota Tedersoo et al. 2018 ; =Aphelidiomycotina Tedersoo et al. 2018 ; =Aphelidiomycetes Tedersoo et al. 2018 ; =Aphelidiaceae Tedersoo et al. 2018 ]
 * Cryptomycota M. D. M. Jones & T. A. Richards 2011 [=Rozellida Lara et al. 2010, emend Karpov & Aleoshin 2014 ; =Rozellomycota Doweld 2013 ; =Rozellosporidia Karpov et al. 2017 ; =Rozellomycotina Tedersoo et al. 2018 ]
 * Microsporidia Balbiani 1882
 * Blastocladiales Petersen 1909 [=Blastocladiineae Petersen 1909 ; Blastocladiomycota T. Y. James 2007 ; Blastocladiomycetes T. Y. James 2007 ]
 * Chytridiomycota Doweld 2001, emend. M. J. Powell in Hibbett et al. 2007
 * Chytridiomycetes de Bary 1863, emend. Cavalier-Smith 1998, emend. M. J. Powell in Hibbett et al. 2007
 * Incertae sedis Chytridiomycetes: Blyttiomyces, Zygorhizidium, Dangeardia
 * Caulochytriales Doweld 2014
 * Chytridiales Cohn 1879, emend. Schröter 1892, emend. D. J. S. Barr 1980, emend. D. J. S. Barr 2001, emend. Letcher & Powell 2006, emend. Mozl.-Standr. 2009, emend. Vélez et al. 2011
 * Cladochytriales Mozl.-Standr. 2009
 * Gromochytriales Karpov & Aleoshin 2014
 * Lobulomycetales D. R. Simmons 2009, emend. D. R. Simmons 2012
 * Mesochytriales Doweld 2013
 * Polychytriales Longcore & D.R. Simmons 2012
 * Polyphagales Doweld 2014
 * Rhizophydiales Letcher 2006, emend. Letcher 2008
 * Rhizophlyctidales Letcher 2008
 * Spizellomycetales D. J. S. Barr 1980, emend. D. J. S. Barr 1983
 * Synchytriales Doweld 2014, emend. Longcore, DR Simmons & Letcher 2016
 * Dikarya Hibbett et al. 2007 emend. Hibbett et al. 2018
 * Incertae sedis Dikarya: Entorrhizomycetes Begerow et al., 2007 [=Entorrhizaceae R. Bauer & Oberw. 1997 ; =Entorrhizales R. Bauer & Oberwinkler 1997 ; =Entorrhizomycetes Begerow et al. 2007 ; =Entorrhizomycota R. Bauer et al. 2015 ; =Entorrhizomycotina Tedersoo et al. 2018 ]
 * Ascomycota Cavalier-Smith 1998
 * Taphrinomycotina O. E. Eriksson & Winka 1997
 * Archaeorhizomyces Rosling & T. James 2011 [=Archaeorhizomycetes Rosling & T. James 2011 ; =Archaeorhizomycetales Rosling & T. James 2011 ]
 * Neolecta Spegazzini 1881 [=Neolectomycetes Eriksson & Winka 1997 ; =Neolectales Landvik et al. 1997 ; =Neolectaceae Redhead 1977 ]
 * Pneumocystis P. Delanoë & Delanoë 1912 [=Pneumocystidales O. E. Eriksson 1994 ; =Pneumocystidomycetes Eriksson & Winka 1997 ; =Pneumocystidaceae]
 * Schizosaccharomyces Lindner, 1893 [=Schizosaccharomycetaceae Beij. ex Klöcker 1905 ; Schizosaccharomycetales O. E. Eriksson et al. 1993 ; =Schizosaccharomycetes O. E. Eriksson & Winka 1997 ]
 * Taphrinales Gäumann & C. W. Dodge 1928 [=Taphrinomycetes O. E. Eriksson & Winka 1997 ]
 * Saccharomycetales Kudryavtsev 1960 [=Saccharomycetes O.E. Eriksson & Winka, 1997 ; =Saccharomycotina O.E. Eriksson & Winka 1997 ]
 * Pezizomycotina O.E. Eriksson & Winka 1997
 * Arthoniales Henssen & Jahns ex D. Hawksw. & O. E. Eriksson 1986 [=Arthoniomycetes O. E. Eriksson & Winka 1997 ]
 * Dothideomycetes O. E. Eriksson & Winka 1997
 * Eurotiomycetes O. E. Eriksson & Winka 1997, emend. Geiser et al. 2006
 * Geoglossaceae Corda 1838, emend. Schoch et al. 2009 [=Geoglossales Zheng Wang et al. 2009 ; Geoglossomycetes Zheng Wang et al. 2009 ]
 * Laboulbeniomycetes Engler 1898
 * Lecanoromycetes O. E. Eriksson & Winka 2001
 * Leotiomycetes O. E. Eriksson & Winka 1997
 * Lichinales Henssen & Büdel 1986 [=Lichinomycetes Reeb et al. 2004 ]
 * Orbiliaceae Nannfeldt 1932 [=Orbiliales Baral et al. 2003 ; =Orbiliomycetes Eriksson & Baral 2003 ]
 * Pezizales J. Schröter 1894 [=Pezizomycetes O. E. Eriksson & Winka 1997 ]
 * Sordariomycetes O. E. Eriksson & Winka 1997
 * Xanthopyreniaceae Zahlbr. 1926 [=Collemopsidiales Pérez-Ortega et al. 2016 ; Collemopsidiomycetes Tedersoo et al. 2018 ]
 * Xylonomycetes R. Gazis & P. Chaverri 2012
 * Basidiomycota R. T. Moore 1980
 * Agaricomycotina Doweld 2001
 * Agaricomycetes Doweld 2001
 * Dacrymycetales Hennings 1898 [=Dacrymycetes Doweld 2001 ]
 * Tremellomycetes Doweld 2001
 * Pucciniomycotina R. Bauer et al. 2006 [=Urediniomycetes Swann & Taylor 1995 ]
 * Agaricostilbomycetes R. Bauer et al. 2006
 * Atractiellales Oberwinkler & Bandoni 1982 [=Atractiellomycetes R. Bauer et al. 2006 ]
 * Classiculales R. Bauer et al. 2003 [=Classiculomycetes R. Bauer et al. 2006 ]
 * Cryptomycocolax Oberwinkler & R. Bauer 1990 [=Cryptomycocolacaceae Oberw. & R. Bauer 1990 ; =Cryptomycocolacales Oberwinkler & R. Bauer 1990 ; =Cryptomycocolacomycetes R. Bauer et al. 2006 ]
 * Cystobasidiomycetes R. Bauer et al. 2006
 * Microbotryomycetes R. Bauer et al. 2006
 * Mixia Kramer 1959 [=Mixiaceae C.L. Kramer 1987 ; =Mixiales R. Bauer et al. 2006 ; Mixiomycetes R. Bauer et al. 2006 ]
 * Pucciniomycetes R. Bauer et al. 2006
 * Spiculogloeaceae Denchev 2009 [=Spiculogloeales R. Bauer et al. 2006 ; =Spiculogloeomycetes Q.M. Wang et al. 2015 ]
 * Tritirachium Limber 1940 [=Tritirachiaceae Aime & Schell 2011 ; =Tritirachiales Aime & Schell 2011 ; =Tritirachiomycetes Aime & Schell 2011 ]
 * Ustilaginomycotina R. Bauer et al. 2006
 * Exobasidiomycetes Begerow et al. 2007
 * Malassezia Baill. 1889 [=Malasseziales R.T. Moore 1980 ; =Malasseziaceae Denchev & R.T. Moore 2009 ; =Malasseziomycetes Boekhout et al. 2014 ]
 * Moniliella Stolk & Dakin, 1966 [=Moniliellaceae Q.M. Wang et al. 2014 ; =Moniliellales Q.M. Wang, et al. 2014 ; =Monilielliomycetes Q.M. Wang et al. 2014 ]
 * Ustilaginomycetes R. Bauer et al. 1997
 * Wallemiomycotina Doweld 2014
 * Wallemia Johan-Olsen 1887 [=Wallemiaceae R.T. Moore 1996 ; =Wallemiales Zalar et al. 2005 ; =Wallemiomycetes Zalar et al. 2005 ]
 * Geminibasidiaceae H.D.T. Nguyen et al. 2013 [=Geminibasidiales H.D.T. Nguyen et al. 2013 ; =Geminibasidiomycetes H.D.T. Nguyen & Seifert 2015 ]
 * Monoblepharidomycetes J.H. Schaffn. 1909
 * Mucoromycota Doweld 2001 emend. Spatafora & Stajich 2016 [Zygomycota F. Moreau 1954, pro parte ; Mucoromyceta Tedersoo et al. 2018 ]
 * Glomeromycotina C. Walker & A. Schüßler 2016
 * Archaeosporales C. Walker & A. Schüßler 2001 [=Archaeosporomycetes Sieverding et al. 2011 ]
 * Glomeromycetes Cavalier-Smith 1998, emend. Oehl et al. 2011
 * Diversisporales C. Walker & A. Schüßler 2001
 * Glomerales J. B. Morton & Benny 1990
 * Paraglomus J.B. Morton & D. Redecker 2001 [=Paraglomeraceae J. B. Morton & D. Redecker 2001 ; =Paraglomerales C. Walker & A. Schüßler 2001 ; =Paraglomeromycetes Oehl et al. 2011 ]
 * Mortierellaceae A. Fischer 1892 [Mortierellales Cavalier-Smith 1998 ; =Mortierellomycotina Kerst et al. 2011 ; =Mortierellomycetes Doweld 2014 ; =Mortierellomycota Tedersoo et al. 2018 ]
 * Mucoromycotina Benny 2007
 * Endogonales Moreau ex R. K. Benjamin 1979 [=Endogonomycetes Doweld 2014 ]
 * Mucorales Fritz 1832, emend. Schröter 1897 [=Mucoromycetes Doweld 2014 ]
 * Umbelopsidales Spatafora, Stajich & Bonito 2016 [=Umbelopsidomycetes Tedersoo et al. 2018 ]
 * Neocallimastigaceae Heath 1983, emend. Barr 1989 [=Neocallimastigales J. L. Li et al. 1993, =Neocallymastigacetes M. J. Powell 2007 , =Neocallimastigomycota M. J. Powell 2007 ]
 * Olpidium (A. Braun) Rabenh. 1868 [=Olpidiaceae J. Schröt. 1889 ; =Olpidiales Cavalier-Smith 2013 ; Olpidiomycota Doweld 2013 ; =Olpidiomycotina Doweld 2013 ; =Olpidiomyceta Tedersoo et al. 2018 ]
 * Zoopagomycota Gryganskyi, M.E. Smith, Spatafora & Stajich 2016 [Zygomycota F. Moreau 1954, pro parte ; Zoopagomyceta Tedersoo et al. 2018 ]
 * Entomophthoromycotina Humber 2007
 * Basidiobolus Eidam 1886 [=Basidiobolomycetes Doweld 2001 emend. Humber 2012 ]
 * Entomophthorales G. Winter 1880 [=Entomophthoromycetes Humber 2012 ]
 * Neozygitaceae Ben-Ze’ev, R.G. Kenneth & Uziel 1987 [=Neozygitomycetes Humber 2012 ; =Neozygitales Humber 2012 ]
 * Zoopagales Bessey ex R.K. Benjamin 1979 [=Zoopagomycotina Benny 2007 ]
 * Kickxellomycotina Benny 2007
 * Asellariales Manier ex Manier & Lichtwardt 1978 [=Asellariaceae Manier ex Manier & Lichtw. 1968 ]
 * Dimargaritaceae R.K. Benjamin 1959 [=Dimargaritales R. K. Benjamin 1979 ]
 * Harpellales Lichtwardt & Manier 1978
 * Kickxellaceae Linder 1943 [=Kickxellales Kreisel ex R. K. Benjamin 1979 ] -->

Amoebozoa Lühe 1913, sensu Cavalier-Smith 1998

 * Incertae sedis Amoebozoa: Belonocystis, Boveella, Biomyxa, Corallomyxa, Gibbodiscus, Hartmannia, Malamoeba, Malpighamoeba, Microcorycia, Microglomus, Oscillosignum, Parmulina, Penardochlamys, Pseudothecamoeba, Rhabdamoeba, Schoutedamoeba, Stereomyxa, Subulamoeba, Thecochaos, Triaenamoeba, Unda, Zonomyxa
 * Tubulinea Smirnov et al. 2005 [=Lobosea Cavalier-Smith 2004 ]


 * Evosea Kang et al. 2017


 * Discosea Cavalier-Smith et al. 2004 sensu Smirnov et al. 2011

Incertae sedis Diaphoretickes

 * Microheliella Cavalier-Smith 2012
 * Ancoracysta Janouskovec et al. 2017
 * Rappemonads Kim et al. 2011 [Rappephyceae Cavalier-Smith in Cavalier-Smith, Chao & Lewis 2015 ]
 * Telonemia Shalchian-Tabrizi 2006 [Telonemea Cavalier-Smith 1993 ]
 * Picozoa Seenivasan et al. 2013 [Picobiliphytes Not et al. 2007 ; Picomonadea Seenivasan et al. 2013 emend. Cavalier-Smith 2017 ]
 * Haptista Cavalier-Smith 2003
 * Haptophyta Hibberd 1976, ex. Edvardsen & Eikrem 2000


 * Centroplasthelida Febvre-Chevalier & Febvre 1984 [Centrohelea Kühn 1926 sensu Cavalier-Smith in Yabuki et al. 2012 ; Centroheliozoa Dürrschmidt & Patterson 1987 ; nicht Centrohelida Kühn 1926 (polyphyletisch – schloßen auch Gymnosphaerida ein)]


 * Cryptista Adl et al., 2019 [Cryptista Cavalier-Smith 1989, emend. 2018 ]
 * Palpitomonas Yabuki & Ishida 2010
 * Cryptophyceae Pascher 1913, emend. Schoenichen 1925, emend. Adl et al. 2012 [Cryptophyta Silva 1962 ; Cryptophyta Cavalier-Smith 1986 ]

Archaeplastida Adl et al. 2005

 * Glaucophyta Skuja 1954 [Glaucocystaceae West 1904 ; Glaucocystophyta Kies & Kremer 1986 ]
 * Rhodophyceae Thuret 1855, emend. Rabenhorst 1863 [Rhodophyta Wettstein 1901 ; Rhodoplantae Saunders & Hommersand 2004 emend. Adl et al. 2005 ]
 * Cyanidiales T. Christensen 1962 [Cyanidiophyceae Merola et al. 1981 ; Cyanidiophyta Moehn ex Doweld 2001 ]
 * Proteorhodophytina Muñoz-Gómez et al. 2017


 * Eurhodophytina G.W.Saunders & Hommersand 2004


 * Chloroplastida Adl et al. 2005 [Viridiplantae Cavalier-Smith 1981 ; Chlorobionta Jeffrey 1982, emend. Bremer 1985, emend. Lewis & McCourt 2004 ; Chlorobiota Kendrick & Crane 1997 ]
 * Chlorophyta Pascher 1914, emend. Lewis & McCourt 2004
 * Ulvophyceae Mattox & Stewart 1984
 * Trebouxiophyceae Friedl 1995 [Pleurastrophyceae Mattox et al. 1984 ; Microthamniales Melkonian 1990 ]
 * Chlorophyceae Christensen 1994
 * Chlorodendrophyceae Fritsch 1917 [prasinophyte clade IV Nakayamaet al. 1998 ]
 * Pedinophyceae Moestrup 1991, emend. Fawley et al. in Adl et al. 2012
 * Chloropicophyceae Lopes dos Santos & Eikrem 2017 [prasinophyte clade VII A & B Lopes dos Santos et al. 2017 ]
 * Picocystophyceae Lopes dos Santos & Eikrem 2017
 * Pyramimonadales Chadefaud 1950 [prasinophyte clade I Nakayama et al. 1998 ]
 * Mamiellophyceae Marin & Melkonian 2010 [prasinophyte clade II Nakayama et al. 1998 ]
 * Nephroselmis Stein, 1878 [Nephroselmidophyceae Cavalier-Smith 1993, emend. Yamaguchi 2011 ; prasinophyte clade III Nakayama et al. 1998 ]
 * Pycnococcaceae Guillard 1991 emend. Fawley 1999 [Pseudoscourfieldiales & Pseudoscourfieldiaceae Melkonian 1990 ; prasinophyte clade V Fawley et al. 2000 ]
 * Palmophyllophyceae Leliaert et al. 2016


 * Streptophyta Bremer & Wanntorp 1981 [Charophyta Migula 1897, emend. Karol et al. 2009 ; Charophyceae Smith 1938 ; Charophyceae Jeffrey 1967 ; Streptophyta Mattox & Stewart 1984 ]
 * Chlorokybus Geitler 1942 [Chlorokybophyceae Lewis & McCourt 2004 ]
 * Mesostigma Lauterborn 1894 [Mesostigmatophyceae Marin & Melkonian 1999, emend. Lewis & McCourt 2004 ; Mesostigmata Turmel et al. 2002 ]
 * Klebsormidiophyceae van den Hoek et al. 1995
 * Phragmoplastophyta Lecointre & Guyander 2006
 * Zygnematophyceae van den Hoek et al. 1995, emend. Hall et al. 2009
 * Coleochaetophyceae Jeffrey 1982
 * Charophyceae Smith 1938, emend. Karol et al. 2009 [Charales Lindley 1836 ; Charophytae Engler 1887 ]
 * Embryophyta Engler 1886, emend. Lewis & McCourt 2004 [Cormophyta Endlicher 1836 ; Plantae Haeckel 1866 ]

Sar Burki et al. 2008, emend. Adl et al. 2012 [Harosa Cavalier-Smith 2010 ]

 * Stramenopiles Patterson 1989, emend. Adl et al. 2005 [Heterokonta Cavalier-Smith, 1981 stat. n. 2017]
 * Incertae sedis Stramenopiles: environmental marine Stramenopiles MAST-21, MAST-25 Massana et al. 2014
 * Incertae sedis Stramenopiles: Platysulcus Shiratori, Nakayama & Ishida 2015
 * Bigyra Cavalier-Smith 1998 emend. 2006
 * Opalozoa Cavalier Smith 1991 emend. 2006
 * Incertae sedis Opalozoa: Cantina, Rictus
 * Incertae sedis Opalozoa: environmental marine Stramenopiles MAST-12 Massana et al. 2014
 * Nanomonadea Cavalier-Smith 2012 [environmental marine Stramenopiles MAST-3 Massana et al. 2014 ]
 * Opalinata Wenyon 1926, emend. Cavalier-Smith 1997 [Slopalinida Patterson 1985 ]
 * Proteromonadea Grasse 1952
 * Opalinea Wenyon 1926
 * Blastocystis Alexeev 1911
 * Placidida Moriya et al. 2002
 * Bicosoecida Grasse 1926, emend. Karpov 1998
 * Sagenista Cavalier-Smith 1995
 * Incertae sedis Sagenista: environmental marine Stramenopiles MAST-4, MAST-7, MAST-8, MAST-9, MAST-10, MAST-11, MAST-20 Massana et al. 2014
 * Labyrinthulomycetes Dick 2001 [Labyrinthulea (Lister, 1891) Olive ex Cavalier-Smith, 1986]
 * Amphitremida Poche 1913 emend. Gomaa et al. 2003
 * Amphifilida Cavalier-Smith 2012
 * Oblongichytrida Bennett et al. 2017
 * Labyrinthulida Doffein 1901
 * Thraustochytrida Sparrow 1943
 * Pseudophyllomitidae Shiratori et al. 2016 [environmental marine Stramenopiles MAST-6 Massana et al. 2014 ]
 * Gyrista Cavalier-Smith 1998
 * Incertae sedis Gyrista: environmental marine Stramenopiles MAST-1, MAST-2, MAST-23 Massana et al. 2014
 * Developea Karpov et Aleoshin 2016
 * Hyphochytriales Sparrow 1960
 * Anisolpidiaceae Karling 1943, emend. Dick 2001
 * Hyphochytrium Karling 1939 [Hyphochytridiomycetaceae Fischer 1892, emend. Karling 1939 ]
 * Rhizidiomycetaceae Karling 1943
 * Peronosporomycetes Dick 2001 [Oomycetes Winter 1897, emend. Dick 1976 ]
 * Incertae sedis Peronosporomycetes: Atkinsiella, Ciliomyces, Crypticola, Ectrogella, Eurychasma, Halodaphnea, Haliphthoros, Haptoglossa, Lagena, Lagenisma, Olpidiopsis, Pontisma, Pythiella, Rozellopsis, Sirolpidium
 * „Saprolegniale Linie“ Lara in Adl et al. 2019
 * „Peronosporale Linie“ Lara in Adl et al. 2019
 * Pirsoniales Cavalier-Smith 1998 emend. 2006
 * Actinophryidae Claus 1874, emend. Hartmann 1926
 * Ochrophyta Cavalier-Smith 1986 emend. Cavalier-Smith & Chao 1996
 * Chrysista Cavalier-Smith 1986
 * Incertae sedis Chrysista: environmental marine Ochrophyta MOCH-3, MOCH-5 Massana et al. 2014
 * Incertae sedis Chrysista: Synchromophyceae Horn & Wilhelm 2007, Chrysomerophyceae Cavalier-Smith 1995 , Picophagus, Chrysowaernella, Aurearena
 * Chrysophyceae Pascher 1914
 * Incertae sedis Chrysophyceae: Chryososaccus, Chrysosphera, Cyclonexis, Lygynion, Phaeoplaca
 * Chromulinales Pascher 1910
 * Hibberdiales Andersen 1989
 * Ochromonadales Pascher 1910
 * Paraphysomonadida Scoble & Cavalier-Smith 2014
 * Synurales Andersen 1987
 * Eustigmatales Hibberd 1981
 * Phaeophyceae Hansgirg 1886 [Phaeophyceae Kjellman 1891, Phaeophyceae Pfitzer 1894 ]
 * Ascoseirales Petrov 1964
 * Desmarestiales Setchell & Gardner 1925
 * Dictyotales Bory de Saint-Vincent 1828
 * Discosporangiales Kawai et al. 2007
 * Ectocarpales Bessey 1907, emend. Silva & Reviers 2000
 * Fucales Bory de Saint-Vincent 1927
 * Ishige Yendo 1907 [Ishigeacea Okamura 1935 ; Ishigeales Cho et al. 2004 ]
 * Laminariales Migula 1908
 * Nemoderma Schousboe ex Bonnet 1892 [Nemodermatales Parente et al. 2008]
 * Onslowiales Draisma & Prud’homme van Reine 2008
 * Ralfsiales Nakamura ex Lim & Kawai 2007
 * Scytothamnales Peters & Clayton 1998
 * Sphacelariales Migula 1908
 * Sporochnales Sauvageau 1926
 * Syringodermatales Henry 1984
 * Tilopteridales Bessey 1907
 * Phaeothamniophyceae Andersen & Bailey in Bailey et al. 1998
 * Phaeothamniales Bourrelly 1954, emend. Andersen & Bailey in Bailey et al. 1998
 * Pleurochloridales Ettl 1956
 * Raphidophyceae Chadefaud 1950, emend. Silva 1980
 * Schizocladia Henry et al. in Kawai et al. 2003 [Schizocladales Kawai et al. 2003 ]
 * Xanthophyceae Allorge 1930, emend. Fritsch 1935 [Heterokontae Luther 1899 ; Heteromonadea Leedale 1983 ; Xanthophyta Hibberd 1990 ]
 * Tribonematales Pascher 1939
 * Vaucheriales Bohlin 1901
 * Diatomista Derelle et al. 2016 emend. Cavalier-Smith 2017
 * Incertae sedis Diatomista: environmental marine Ochrophyta MOCH-1, MOCH-2, MOCH-4 Massana et al. 2014
 * Bolidophyceae Guillou et al. 1999 [Parmales Booth & Marchant 1987 ]
 * Diatomeae Dumortier 1821 [=Bacillariophyta Haeckel, 1878 ]
 * Leptocylindrophytina D.G. Mann, in Adl et al. 2019
 * Leptocylindrophyceae D.G. Mann, in Adl et al. 2019
 * Corethrophyceae D.G. Mann, in Adl et al. 2019
 * Ellerbeckiophytina D.G. Mann, in Adl et al. 2019
 * Probosciophytina D.G. Mann, in Adl et al. 2019
 * Melosirophytina D.G. Mann, in Adl et al. 2019
 * Coscinodiscophytina Medlin & Kaczmarska 2004, emend. Adl et al. 2019
 * Rhizosoleniophytina D.G. Mann, in Adl et al. 2019
 * Arachnoidiscophytina D.G. Mann, in Adl et al. 2019
 * Bacillariophytina Medlin & Kaczmarska 2004, emend. Adl et al. 2019
 * Mediophyceae Jouse & Proshkina-Lavrenko in Medlin & Kaczmarska 2004
 * Chaetocerotophycidae Round & R.M. Crawford in Round et al. 1990, emend. Adl et al. 2019
 * Lithodesmiophycidae Round & R.M. Crawford in Round et al. 1990, emend. Adl et al. 2019
 * Thalassiosirophycidae Round & R.M. Crawford in Round et al. 1990
 * Cymatosirophycidae Round & R.M. Crawford in Round et al. 1990
 * Odontellophycidae D. G. Mann, in Adl et al. 2019
 * Chrysanthemodiscophycidae D.G. Mann, in Adl et al. 2019
 * Biddulphiophyceae D. G. Mann, in Adl et al. 2019
 * Biddulphiophycidae Round & R.M. Crawford in Round et al. 1990, emend. Adl et al. 2019
 * Attheya T. West 1860
 * Bacillariophyceae Haeckel 1878, emend. Adl et al. 2019
 * Striatellaceae Kützing 1844
 * Urneidophycidae Medlin 2016
 * Fragilariophycidae Round in Round, Crawford & Mann 1990, emend. Adl et al. 2019
 * Bacillariophycidae D.G. Mann in Round, Crawford & Mann 1990, emend. Adl et al. 2019
 * Dictyochophyceae Silva 1980
 * Dictyochales Haeckel 1894
 * Pedinellales Zimmermann et al. 1984
 * Rhizochromulinales O’Kelly & Wujek 1994
 * Pelagophyceae Andersen & Saunders 1993
 * Pelagomonadales Andersen & Saunders 1993
 * Sarcinochrysidales Gayral & Billard 1977
 * Pinguiophyceae Kawachi et al. 2003
 * Alveolata Cavalier-Smith 1991
 * Colpodellida Cavalier-Smith 1993, emend. Adl et al. 2005, 2019
 * Vitrellaceae Oborník & Lukeš 2012
 * Colpodellaceae Adl et al. 2019
 * Chromeraceae Oborník & Lukeš 2012
 * Alphamonaceae Adl et al. 2019
 * Perkinsidae Levine 1978, emend. Adl et al. 2005 [Perkinsozoa Moestrup & Rehnstam-Holm, 1999 ; Perkinsozoa Norén & Moestrup, 1999 ]
 * Colponemida Cavalier-Smith 1993 emend. Adl et al. 2019
 * Colponemidia Tikhonenkov et al. 2014
 * Acavomonidia Tikhonenkov et al. 2014
 * Palustrimonas Patterson & Simpson, 1996
 * Oxyrrhis Dujardin 1841 [Oxyrrhinaceae Sournia 1984 ]
 * Dinoflagellata Bütschli 1885, emend. Fensome et al. 1993, emend. Adl et al. 2005
 * Incertae sedis Dinoflagellata: Adenoides, Akashiwo, Amphidiniella, Ankistrodinium, Apicoporus, Archaeosphaerodiniopsis, Bispinodinium, Bysmatrum, Cabra, Cladopyxis, Crypthecodinium, Cucumeridinium, Dactylodinium, Dicroerisma, Gloeodinium, Grammatodinium, Gynogonadinium, Gyrodiniellum, Halostylodinium, Heterodinium, Moestrupia, Paragymnodinium, Phytodinium, Plagiodinium, Planodinium, Pileidinium, Pseudadenoides, Pseudothecadinium, Pyramidodinium, Roscoffia, Sabulodinium, Sphaerodinium, Spiniferodinium, Testudodinium, Thecadinium,Thecadiniopsis, Togula
 * Incertae sedis Dinoflagellata: [Blastodiniales Chatton 1906 ]
 * Syndiniales Loeblich III 1976
 * Incertae sedis Syndiniales: Duboscquella, Ichthyodinium (environmental marine Alveolate (MALV) Group I), Merodinium
 * Incertae sedis Syndiniales: Ellobiopsidae Coutière 1911
 * Euduboscquellidae Coats & Bachvaroff 2012
 * Amoebophryidae Cachon 1964 (environmental marine Alveolate Group II López-García et al., 2001 )
 * Syndinidae Chatton 1910 (environmental marine Alveolate Group IV Guillou et al., 2008 )
 * Sphaeriparaceae Loeblich III 1970
 * Noctilucales Haeckel 1894 [Noctiluciphyceae Fensome et al. 1993 ]
 * Dinophyceae Pascher 1914
 * Gymnodiniphycidae Fensome et al. 1993
 * Gymnodinium F. Stein 1878, emend. G. Hansen & Moestrup in Daugbjerg et al. 2000 sensu stricto
 * Amphidinium Claparède & Lachmann 1859, emend. Flø Jørgensen et al. 2004 sensu stricto
 * Gyrodinium Kofoid & Swezy 1921, emend. G. Hansen & Moestrup in Daugbjerg et al. 2000 sensu stricto
 * Kareniaceae Bergholtz et al. 2005
 * Ceratoperidiniaceae Loeblich III 1980, emend. Reñé & de Salas 2013
 * Torodiniales Boutrup, Moestrup & Daugbjerg 2016
 * Levanderina Moestrup et al. 2014
 * Margalefidinium F. Gómez, Richlen & D.M. Anderson 2017
 * Cochlodinium F. Schütt emend. F. Gómez, Richlen & D.M. Anderson 2017 sensu stricto
 * Ptychodiscales Fensome et al. 1993
 * Borghiellaceae Moestrup, Lindberg, & Daugbjerg 2009
 * Tovelliaceae Moestrup et al. 2005
 * Suessiaceae Fensome et al. 1993, emend. Moestrup et al. 2009
 * Peridiniphycidae Fensome et al. 1993
 * Gonyaulacales Taylor 1980
 * Peridiniales Haeckel 1894
 * Thoracosphaeraceae Schiller 1930
 * Podolampadaceae Lindemann 1928
 * Kryptoperidiniaceae Lindemann 1925
 * Heterocapsaceae Fensome et al. 1993
 * Amphidomataceae Sournia 1984
 * Oxytoxaceae Lindemann 1928
 * Centrodiniaceae Hernández-Becerril 2010
 * Dinophysales Kofoid 1926
 * Prorocentrales Lemmermann 1910
 * Apicomplexa Levine 1980, emend. Adl et al. 2005
 * Incertae sedis Apicomplexa: Agamococcidiorida Levine 1979
 * Incertae sedis Apicomplexa: Protococcidiorida Kheisin 1956
 * Incertae sedis Apicomplexa: Aggregata, Christalloidophora, Dobellia, Echinococcidium, Globidiellum, Joyeuxella, Rhabdospora, Spermatobium, Spiriopsis, Spirogregarina, Toxocystis, Trophosphaera
 * Aconoidasida Mehlhorn et al. 1980 [=Hematozoa Vivier 1982 ]
 * Haemospororida Danilewsky 1885
 * Piroplasmorida Wenyon 1926
 * Nephromycida Cavalier-Smith 1993, emend. Adl et al. 2019
 * Conoidasida Levine 1988
 * Coccidia Leuckart 1879
 * Adeleorina Léger 1911
 * Eimeriorina Léger 1911
 * Gregarinasina Dufour 1828
 * Incertae sedis Gregarinasina: Digyalum, Exoschizon
 * Archigregarinorida Grassé 1953
 * Eugregarinorida Léger 1900
 * Neogregarinorida Grassé 1953
 * Cryptogregarinorida Cavalier-Smith 2014 emend Adl et al. 2019
 * Blastogregarinea Chatton & Villeneuve 1936, emend. Simdyanov et al. 2018
 * Ciliophora Doflein, 1901 [Ciliata Perty, 1852 ; Infusoria Bütschli, 1887 ]
 * Postodesmatophora Gerassimova & Seravin, 1976
 * Karyorelictea Corliss, 1974
 * Kentrophoridae Jankowski, 1980
 * Loxodida Jankowski, 1980
 * Cryptopharyngidae Jankowski, 1980
 * Loxodidae Bütschli, 1889
 * Geleiidae Kahl, 1933
 * Heterotrichea Stein, 1859
 * Blepharismidae Jankowski in Small & Lynn, 1985
 * Climacostomidae Repak, 1972
 * Condylostomatidae Kahl in Doflein & Reichenow, 1929
 * Fabreidae Shazib et al., 2014
 * Gruberiidae Shazib et al., 2014
 * Coliphorina Jankowski, 1967
 * Folliculinidae Dons, 1914
 * Maristentoridae Miao et al., 2005
 * Peritromidae Stein, 1867
 * Spirostomidae Stein, 1867
 * Stentoridae Carus, 1863
 * Intramacronucleata Lynn, 1996
 * Incertae sedis Intramacronucleata: Protocruzia Faria da Cunha & Pinto 1922 [Protocruziidae Jankowski, 1980 ; Protocruziidia de Puytorac et al., 1987 ]
 * SAL Gentekaki et al., 2014
 * Incertae sedis SAL: Cariacothrix Orsi et al., 2012 [Cariacotrichea Orsi et al., 2011 ]
 * Incertae sedis SAL: Mesodiniidae Jankowski, 1980
 * Incertae sedis SAL: Phacodinium Prowazek, 1900 [Phacodiniidia Small & Lynn, 1985 ]
 * Spirotrichea Bütschli, 1889
 * Euplotia Jankowski, 1979
 * Euplotida Small & Lynn, 1985
 * Aspidiscidae Ehrenberg, 1830
 * Certesiidae Borror & Hill, 1995
 * Euplotidae Ehrenberg, 1838
 * Gastrocirrhidae Fauré-Fremiet, 1961
 * Uronychidae Jankowski, 1975
 * Discocephalida Wicklow, 1982
 * Discocephalidae Jankowski, 1979
 * Pseudoamphisiellidae Song et al., 1997
 * Perilemmaphora Berger, 2008
 * Hypotrichia Stein, 1859
 * Stichotrichida Fauré-Fremiet, 1961
 * Amphisiellidae Jankowski, 1979
 * Atractosidae Bourland, 2015
 * Epiclintidae Wicklow & Borror, 1990
 * Gonostomatidae Small & Lynn, 1985
 * Halteriidae Claparède & Lachmann, 1858
 * Holostichidae Fauré-Fremiet, 1961
 * Kahliellidae Tuffrau, 1979
 * Keronidae Dujardin, 1840
 * Oxytrichidae Ehrenberg, 1830
 * Parabirojimidae Dai & Xu, 2011
 * Plagiotomidae Bütschli, 1887
 * Psammomitridae Jankowski, 1979
 * Pseudoamphisiellidae Song et al., 1996
 * Psilotrichidae Bütschli, 1889
 * Schmidingerotrichidae Foissner, 2012
 * Spirofilidae von Gelei, 1929
 * Trachelostylidae Small & Lynn, 1985
 * Uroleptidae Foissner & Stoeck, 2008
 * Urostylida Jankowski, 1979
 * Bergeriellidae Liu et al., 2010
 * Hemicycliostylidae Lyu et al., 2018
 * Pseudokeronopsidae Borror & Wicklow, 1983
 * Pseudourostylidae Jankowski, 1979
 * Urostylidae Bütschli, 1889
 * Oligotrichia Bütschli, 1887
 * Oligotrichida Bütschli, 1887
 * Cyrtostrombidiidae Agatha, 2004
 * Pelagostrombidiidae Agatha, 2004
 * Strombidiidae Fauré-Fremiet, 1970
 * Tontoniidae Agatha, 2004
 * Choreotrichida Small & Lynn, 1985
 * Incertae sedis Choreotrichida: Lynnella Liu et al., 2011 [Lynnellidae Liu et al., 2011 ; Lynnellida Liu et al., 2015 ]
 * Strobilidiina Jankowski, 1980
 * Leegaardiellidae Lynn & Montagnes, 1988
 * Lohmanniellidae Montagnes & Lynn, 1991
 * Strobilidiidae Kahl in Doflein & Reichenow, 1929
 * Strombidinopsidae Small & Lynn, 1985
 * Tintinnina Kofoid & Campbell, 1929
 * Incertae sedis Tintinnina: Helicostomella, Tintinnopsis
 * Ascampbelliellidae Corliss, 1960
 * Cyttarocylididae Kofoid & Campbell, 1929 [vielleicht =Petalotrichidae Kofoid & Campbell, 1929 ]
 * Dictyocystidae Haeckel, 1873
 * Epiplocylididae Kofoid & Campbell, 1939
 * Eutintinnidae Bachy et al., 2012
 * Favellidae Kofoid & Campbell, 1929
 * Nolaclusiliidae Sniezek et al., 1991
 * Petalotrichidae Kofoid & Campbell, 1929 [vielleicht =Cyttarocylididae Kofoid & Campbell, 1939 ]
 * Ptychocylididae Kofoid & Campbell, 1929
 * Rhabdonellidae Kofoid & Campbell, 1929
 * Stenosemellidae Campbell, 1954
 * Tintinnidae Claparède & Lachmann, 1858
 * Tintinnidiidae Kofoid & Campbell, 1929
 * Undellidae Kofoid & Campbell, 1929
 * Xystonellidae Kofoid & Campbell, 1929
 * Licnophoridae Bütschli, 1887
 * Kiitrichidae Nozawa, 1941
 * Lamellicorticata Vďačný et al., 2010
 * Armophorea Lynn, 2004
 * Incertae sedis Armophorea: Mylestomatidae Kahl in Doflein & Reichenow, 1929
 * Metopida Jankowski, 1980
 * Metopidae Kahl, 1927
 * Apometopidae Foissner, 2016
 * Tropidoatractidae Rotterová et al., 2018
 * Clevelandellida de Puytorac & Grain, 1976
 * Clevelandellidae Kidder, 1938
 * Inferostomatidae Ky, 1971
 * Neonyctotheridae Affa’a, 1987
 * Nyctotheridae Amaro, 1972
 * Sicuophoridae Amaro, 1972
 * Caenomorphidae Poche, 1913
 * Odontostomatida Sawaya, 1940
 * Discomorphellidae Corliss, 1960
 * Epalxellidae Corliss, 1960 (kann zu Plagiopylida gehören)
 * Litostomatea Small & Lynn, 1981
 * Rhynchostomatia Jankowski 1980
 * Dileptida Jankowski, 1978
 * Dileptidae Jankowski, 1980
 * Dimacrocaryonidae Jankowski, 1978
 * Tracheliidae Ehrenberg, 1838
 * Haptoria Corliss, 1974
 * Incertae sedis Haptoria: Chaenea
 * Lacrymariidae de Fromentel, 1876
 * Haptorida Corliss, 1974
 * Enchelyodonidae Foissner et al., 2002
 * Homalozoonidae Jankowski, 1980
 * Pleuroplitidae Foissner, 1996
 * Didiniidae Poche, 1913
 * Pleurostomatida Schewiakoff, 1896
 * Amphileptidae Bütschli, 1889
 * Litonotidae Kent, 1882
 * Kentrophyllidae Wu et al., 2015
 * Spathidiida Foissner & Foissner, 1988
 * Acropisthiidae Foissner & Foissner, 1988
 * Actinobolinidae Kahl, 1930
 * Apertospathulidae Foissner et al., 2005
 * Enchelyidae Ehrenberg, 1838
 * Pseudoholophryidae Berger et al., 1984
 * Spathidiidae Kahl in Doflein & Reichenow, 1929
 * Trachelophyllidae Kent, 1882
 * Helicoprorodontidae Small & Lynn, 1985
 * Trichostomatia Bütschli, 1889
 * Vestibuliferida de Puytorac et al., 1974
 * Balantidiidae Reichenow in Doflein & Reichenow, 1929
 * Buetschliidae Poche, 1913
 * Paraisotrichidae da Cunha, 1917
 * Protocaviellidae Grain in Corliss, 1979
 * Protohalliidae da Cunha & Muniz, 1927
 * Pycnotrichidae Poche, 1913
 * Isoendo Adl et al. 2019
 * Isotrichidae Bütschli, 1889
 * Entodiniomorphida Reichenow in Doflein & Reichenow, 1929
 * Blepharocorythina Wolska, 1971
 * Blepharocorythidae Hsiung, 1929
 * Parentodiniidae Ito, Miyazaki & Imai, 2002
 * Pseudoentodiniidae Wolska, 1986
 * Entodiniomorphina Reichenow in Doflein & Reichenow, 1929
 * Cycloposthiidae Poche, 1913
 * Gilchristidae Ito, Ishihara & Imai, 2014
 * Ophryoscolecidae Stein, 1859
 * Polydiniellidae Corliss, 1960
 * Rhinozetidae Van Hoven, Gilchrist & Hamilton-Attwell, 1988
 * Spirodiniidae Strelkow, 1939
 * Telamodiniidae Latteur & Dufey, 1967
 * Troglodytellidae Corliss, 1979
 * Macropodiniida Lynn, 2008
 * Amylovoracidae Cameron & O’Donoghue, 2002
 * Macropodiniidae Dehority, 1996
 * Polycostidae Cameron & O’Donoghue, 2003
 * CONthreeP Lynn in Adl et al., 2012 [Ventrata Cavalier-Smith, 2004 ]
 * Incertae sedis CONthreeP: Askenasia Blochmann, 1895
 * Incertae sedis CONthreeP: Cyclotrichiidae Jankowski, 1980
 * Incertae sedis CONthreeP: Paraspathidium Noland, 1937
 * Incertae sedis CONthreeP: Pseudotrachelocercidae Song, 1990
 * Incertae sedis CONthreeP: Discotrichidae Jankowski, 1967 [Discotrichida Fan et al., 2014 ]
 * Phyllopharyngea de Puytorac et al., 1974
 * Synhymeniida de Puytorac et al. in Deroux, 1978
 * Nassulopsidae Deroux in Corliss, 1979
 * Orthodonellidae Jankowski, 1968
 * Scaphidiodontidae Deroux in Corliss, 1979
 * Synhymeniidae Jankowski in Small & Lynn, 1985
 * Subkinetalia Gong et al., 2009
 * Cyrtophoria Fauré-Fremiet in Corliss, 1956
 * Chlamydodontida Deroux, 1976
 * Chilodonellidae Deroux, 1970
 * Chitonellidae Small & Lynn, 1985
 * Chlamydodontidae Stein, 1859
 * Gastronautidae Deroux, 1994
 * Kryoprorodontidae Alekperov & Mamajeva, 1992
 * Lynchellidae Jankowski, 1968
 * Dysteriida Deroux, 1976
 * Dysteriidae Claparède & Lachmann, 1858
 * Hartmannulidae Poche, 1913
 * Kyaroikeidae Sniezek & Coats, 1996
 * Plesiotrichopidae Deroux, 1976
 * Chonotrichia Wallengren, 1895
 * Exogemmida Jankowski, 1972
 * Chilodochonidae Wallengren, 1895
 * Filichonidae Jankowski, 1973
 * Helichonidae Jankowski, 1972
 * Lobochonidae Jankowski, 1967
 * Phyllochonidae Jankowski, 1972
 * Spirochonidae Stein, 1854
 * Cryptogemmida Jankowski, 1975
 * Actinichonidae Jankowski, 1973
 * Echinichonidae Jankowski, 1973
 * Inversochonidae Jankowski, 1973
 * Isochonidae Jankowski, 1973
 * Isochonopsidae Batisse & Crumeyrolle, 1988
 * Stylochonidae Mohr, 1948
 * Rhynchodia Chatton & Lwoff, 1939
 * Hypocomidae Bütschli, 1889
 * Rhynchodida Chatton & Lwoff, 1939
 * Ancistrocomidae Chatton & Lwoff, 1939
 * Sphenophryidae Chatton & Lwoff, 1921
 * Suctoria Claparède & Lachmann, 1858
 * Exogenida Collin, 1912
 * Allantosomatidae Jankowski, 1967
 * Dentacinetidae Batisse, 1992
 * Dendrosomididae Jankowski, 1978
 * Ephelotidae Kent, 1882
 * Lecanophryidae Jankowski, 1973
 * Metacinetidae Bütschli, 1889
 * Manuelophryidae Dovgal, 2002
 * Ophryodendridae Stein, 1867
 * Paracinetidae Jankowski, 1978
 * Phalacrocleptidae Kozloff, 1966
 * Podophryidae Haeckel, 1866
 * Praethecacinetidae Dovgal, 1996
 * Rhabdophryidae Jankowski, 1970
 * Severonidae Jankowski, 1981
 * Spelaeophryidae Jankowski in Batisse, 1975
 * Tachyblastonidae Grell, 1950
 * Thecacinetidae Matthes, 1956
 * Endogenida Collin, 1912
 * Acinetidae Stein, 1859
 * Acinetopsidae Jankowski, 1978
 * Choanophryidae Dovgal, 2002
 * Corynophryidae Jankowski, 1981
 * Dactylostomatidae Jankowski, 1978
 * Dendrosomatidae Fraipont, 1878
 * Endosphaeridae Jankowski in Corliss, 1979
 * Erastophryidae Jankowski, 1978
 * Pseudogemmidae Jankowski, 1978
 * Rhynchetidae Jankowski, 1978
 * Solenophryidae Jankowski, 1981
 * Tokophryidae Jankowski in Small & Lynn, 1985
 * Trichophryidae Fraipont, 1878
 * Evaginogenida Jankowski in Corliss, 1979
 * Cometodendridae Jankowski, 1978
 * Cyathodiniidae da Cunha, 1914
 * Dendrocometidae Haeckel, 1866
 * Discophryidae Collin, 1912
 * Enchelyomorphidae Augustin & Foissner, 1992
 * Heliophryidae Corliss, 1979
 * Periacinetidae Jankowski, 1978
 * Prodiscophryidae Jankowski, 1978
 * Rhynchophryidae Jankowski, 1978
 * Stylocometidae Jankowski, 1978
 * Trypanococcidae Dovgal, 2002
 * Colpodea Small & Lynn, 1981
 * Bursariomorphida Fernández-Galiano, 1978
 * Bryometopidae Jankowski, 1980
 * Bursaridiidae Foissner, 1993
 * Bursariidae Bory de St. Vincent, 1826
 * Colpodida de Puytorac et al., 1974
 * Incertae sedis Colpodida: Bardeliellidae Foissner, 1984
 * Incertae sedis Colpodida: Hausmanniellidae Foissner, 1987
 * Incertae sedis Colpodida: Ilsiellidae Bourland et al., 2011
 * Incertae sedis Colpodida: Pseudochlamydonellidae Buitkamp et al., 1989
 * Incertae sedis Colpodida: Marynidae Poche, 1913
 * Bryophryina de Puytorac et al., 1979
 * Bryophryidae de Puytorac et al., 1979
 * Sandmanniellidae Foissner & Stoeck, 2009
 * Colpodina Foissner et al., 2011
 * Colpodidae Bory de St. Vincent, 1826
 * Grandoriidae Corliss, 1960
 * Tillinidae Foissner et al., 2011
 * Grossglockneriidae Foissner, 1980 [Grossglockneriina Foissner, 1980 ]
 * Cyrtolophosidida Foissner, 1978
 * Cyrtolophosididae Stokes, 1888
 * Kreyellidae Foissner, 1979
 * Platyophryida de Puytorac et al., 1979
 * Ottowphryidae Foissner et al., 2011
 * Platyophryidae de Puytorac et al., 1979
 * Sagittariidae Grandori & Grandori, 1935
 * Sorogenidae Bradbury & Olive, 1980
 * Woodruffiidae Gelei, 1954
 * Nassophorea Small & Lynn, 1981
 * Colpodidiidae Foissner, 1995
 * Nassulida Jankowski, 1967
 * Furgasoniidae Corliss, 1979
 * Nassulidae de Fromentel, 1874
 * Microthoracida Jankowski, 1967
 * Microthoracidae Wrzesniowski, 1870
 * Leptopharyngidae Kahl, 1926
 * Prostomatea Schewiakoff, 1896
 * Apsiktratidae Foissner et al., 1994 [Prostomatida Schewiakoff, 1896 ]
 * Prorodontida Corliss, 1974
 * Balanionidae Small & Lynn, 1985
 * Cryptocaryonidae Wright & Colorni, 2002
 * Colepidae Ehrenberg, 1838
 * Holophryidae Perty, 1852
 * Lagynidae Sola et al., 1990
 * Metacystidae Kahl, 1926
 * Placidae Small & Lynn, 1985
 * Plagiocampidae Kahl, 1926
 * Prorodontidae Kent, 1881
 * Urotrichidae Small & Lynn, 1985
 * Plagiopylea Small & Lynn, 1985
 * Plagiopylida Small & Lynn, 1985
 * Epalxellidae Corliss, 1960 (kann zu Odontostomatida gehören)
 * Plagiopylidae Schewiakoff, 1896
 * Sonderiidae Small & Lynn, 1985
 * Trimyemidae Kahl, 1933
 * Oligohymenophorea de Puytorac et al., 1974
 * Apostomatia Chatton & Lwoff, 1928
 * Apostomatida Chatton & Lwoff, 1928
 * Colliniidae Cépède, 1910
 * Cyrtocaryidae Corliss, 1979
 * Foettingeriidae Chatton, 1911
 * Pseudocolliniidae Chantangsi et al., 2013
 * Astomatophorida Jankowski, 1966
 * Opalinopsidae Hartog, 1906
 * Pilisuctorida Jankowski, 1966
 * Conidophryidae Kirby, 1941
 * Astomatia Schewiakoff, 1896
 * Anoplophryidae Cépède, 1910
 * Buetschliellidae de Puytorac in Corliss, 1979
 * Clausilocolidae de Puytorac in Corliss, 1979
 * Contophryidae de Puytorac, 1972
 * Haptophryidae Cépède, 1923
 * Hoplitophryidae Cheissin, 1930
 * Intoshellinidae Cépède, 1910
 * Maupasellidae Cépède, 1910
 * Radiophryidae de Puytorac, 1972
 * Hymenostomatia Delage & Hérouard, 1896
 * Tetrahymenida Fauré-Fremiet in Corliss, 1956
 * Incertae sedis Tetrahymenida: Trichospiridae Kahl, 1926
 * Curimostomatidae Jankowski, 1968
 * Glaucomidae Corliss, 1971
 * Spirozonidae Kahl, 1926
 * Tetrahymenidae Corliss, 1952
 * Turaniellidae Didier, 1971
 * Ophryoglenida Canella, 1964
 * Ichthyophthiriidae Kent, 1881
 * Ophryoglenidae Kent, 1881
 * Peniculia Fauré-Fremiet in Corliss, 1956
 * Peniculida Fauré-Fremiet in Corliss, 1956
 * Clathrostomatidae Kahl, 1926
 * Frontoniidae Kahl, 1926
 * Lembadionidae Jankowski in Corliss, 1979
 * Maritujidae Jankowski in Small & Lynn, 1985
 * Neobursaridiidae Dragesco & Tuffrau, 1967
 * Parameciidae Dujardin, 1840
 * Paranassulidae Fauré-Fremiet, 1962 (Paranassula)
 * Stokesiidae Roque, 1961
 * Urocentridae Claparède & Lachmann, 1858 [Urocentrida de Puytorac, Grain & Mignot, 1987 ]
 * Peritrichia Stein, 1859
 * Sessilida Kahl, 1933
 * Astylozoidae Kahl, 1935
 * Ellobiophryidae Chatton & Lwoff, 1929
 * Epistylididae Kahl, 1933
 * Lagenophryidae Bütschli, 1889
 * Operculariidae Fauré-Fremiet in Corliss, 1979
 * Rovinjellidae Matthes, 1972
 * Scyphidiidae Kahl, 1933
 * Termitophryidae Lom in Corliss, 1979
 * Usconophryidae Clamp, 1991
 * Vaginicolidae de Fromentel, 1874
 * Vorticellidae Ehrenberg, 1838
 * Zoothamniidae Sommer, 1951
 * Mobilida Kahl, 1933
 * Polycyclidae Poljansky, 1951
 * Trichodinidae Claus, 1874
 * Trichodinopsidae Kent, 1881
 * Urceolariidae Dujardin, 1840
 * Scuticociliatia Small, 1967
 * Philasterida Small, 1967
 * Cohnilembidae Kahl, 1933
 * Cryptochilidae Berger in Corliss, 1979
 * Entodiscidae Jankowski, 1973
 * Entorhipidiidae Madsen, 1931
 * Orchitophryidae Cépède, 1910
 * Paralembidae Corliss & de Puytorac in Small & Lynn, 1985
 * Parauronematidae Small & Lynn, 1985
 * Philasteridae Kahl, 1931
 * Pseudocohnilembidae Evans & Thompson, 1964
 * Schizocaryidae Jankowski, 1979
 * Thigmophryidae Chatton & Lwoff, 1926
 * Thyrophylacidae Berger in Corliss, 1961
 * Uronematidae Thompson, 1964
 * Urozonidae Grolière, 1975
 * Pleuronematida Fauré-Fremiet in Corliss, 1956
 * Calyptotrichidae Small & Lynn, 1985
 * Conchophthiridae Kahl in Doflein & Reichenow, 1929
 * Ctedoctematidae Small & Lynn, 1985
 * Cyclidiidae Ehrenberg, 1838
 * Dragescoidae Jankowski, 1980
 * Eurystomatellidae Miao et al., 2010
 * Histiobalantiidae de Puytorac & Corliss in Corliss, 1979
 * Peniculistomatidae Fenchel, 1965
 * Pleuronematidae Kent, 1881
 * Thigmocomidae Kazubski, 1958
 * Thigmotrichida Chatton & Lwoff, 1922
 * Ancistridae Issel, 1903
 * Hemispeiridae König, 1894
 * Hysterocinetidae Diesing, 1866
 * Paraptychostomidae Ngassam et al. 1994
 * Loxocephalida Jankowski, 1964
 * Cinetochilidae Perty, 1852
 * Loxocephalidae Jankowski, 1964 (Cardiostomatella, Dexiotricha, Loxocephalus)
 * Rhizaria Cavalier-Smith 2002
 * Incertae sedis Rhizaria: Gymnosphaerida Poche 1913, emend. Mikrjukov 2000
 * Cercozoa Cavalier-Smith 1998, emend. Adl et al. 2005, emend. Cavalier-Smith 2018
 * Incertae sedis Cercozoa: Discocelia Cavalier-Smith 2013 [Discocelis Vørs 1988 ]
 * Incertae sedis Cercozoa: Psammonobiotidae Golemansky 1974, emend Meisterfeld, 2002 (gehört wahrscheinlich zu Euglyphida)
 * Incertae sedis Cercozoa: Volutellidae Sudzuki 1979
 * Incertae sedis Cercozoa: Kraken Dumack, Schuster, Bass et Bonkowski, 2016
 * Incertae sedis Cercozoa: Dictiomyxa, Katabia, Myxodictyium, Pontomyxa, Protomyxa, Protogenes, Pseudospora, Rhizoplasma
 * Cercomonadida Poche 1913, emend. Vickerman 1983, emend. Mylnikov 1986, emend. Karpov et al. 2006, emend Howe et al. 2009, emend Cavalier-Smith 2012 [=Cercomonadidae Kent 1880, emend. Mylnikov & Karpov 2004 ; Cercobodonidae Hollande 1942 ]
 * Paracercomonadida Cavalier-Smith 2018
 * Glissomonadida Howe & Cavalier-Smith 2009 [Heteromitidae Kent 1880, emend. Mylnikov 1990, emend. Mylnikov & Karpov 2004 ; Bodomorphidae Hollande 1952 ]
 * Sandonidae Howe et al. 2009
 * Dujardinidae Howe & Cavalier-Smith, 2011
 * Bodomorphidae Hollande 1952 emend. Cavalier-Smith in Howe et al. 2009
 * Proleptomonadidae Howe et al. 2009
 * Allapsidae Howe & Cavalier-Smith 2009
 * Viridiraptoridae Hess & Melkonian 2013
 * Pansomonadidae Vickerman in Vickerman et al. 2005
 * Sainouroidea Schuler et al. 2018 [Helkesida Cavalier-Smith 2018 ]
 * Sainouridae Cavalier-Smith 2008
 * Helkesimastigidae Cavalier-Smith 2008
 * Guttulinopsidae Olive 1970
 * Thecofilosea Cavalier-Smith 2003, emend. Cavalier-Smith 2011
 * Incertae sedis Thecofilosea: Mataza Yabuki & Ishida 2011
 * Phaeodarea Haeckel 1879 [Tripylea Hertwig 1879 ]
 * Phaeoconchia Haeckel 1879
 * Phaeocystina Haeckel 1879
 * Phaeogromia Haeckel 1879
 * Phaeosphaeria Haeckel 1879
 * Cryomonadida Cavalier-Smith 1993
 * Rhogostomidae Dumack et al. 2017
 * Protaspidae Cavalier-Smith 1993
 * Ventricleftida Cavalier-Smith 2011
 * Tectofilosida Cavalier-Smith 2003
 * Chlamydophryidae de Saedeleer 1934
 * Ebriacea Lemmermann 1901 [Ebriidae Poche 1913 ; Ebriida Deflandre 1936 ]
 * Imbricatea Cavalier-Smith 2011 [Imbricatea Cavalier-Smith in Cavalier-Smith & Chao, 2003 ]
 * Incertae sedis Imbricatea: Discomonas Chantangsi & Leader, 2010
 * Spongomonadida Hibberd, 1983 [Spongomonadidae Karpov 1990 ]
 * Marimonadida Cavalier-Smith & Bass 2011
 * Variglissida Cavalier-Smith, 2014
 * Silicofilosea Adl et al. 2005, emend. Adl et al. 2012
 * Thaumatomonadida Shirkina, 1987 [Thaumatomastigidae Patterson & Zoelfell 1991 ]
 * Thaumatomonadidae Hollande, 1952
 * Esquamula Shiratori, Yabuki & Ishida, 2012
 * Peregriniidae Cavalier-Smith, 2011
 * Euglyphida Copeland 1956, emend. Cavalier-Smith 1997
 * Incertae sedis Euglyphida: Ampullataria, Euglyphidion, Heteroglypha, Matsakision, Pareuglypha, Pileolus
 * Euglyphina Kosakyan et al., 2016
 * Assulinidae Lara et al., 2007
 * Sphenoderiidae Chatelain et al., 2013
 * Trinematidae Hoogenraad & De Groot 1940, emend Adl et al. 2012
 * Euglyphidae Wallich 1864, emend Lara et al. 2007
 * Tracheleuglypha Deflandre, 1928
 * Cyphoderiidae de Saedeleer 1934
 * Paulinellidae de Saedeller 1934, emend. Adl et al. 2012
 * Metromonadea Cavalier-Smith 2007, emend. Cavalier-Smith 2011
 * Granofilosea Cavalier-Smith & Bass 2009
 * Incertae sedis Granofilosea : Apogromia, Kibisidytes, Leucodictyon, Limnofila, Mesofila, Microcometes, Microgromia, Nanofila, Reticulamoeba, wahrscheinlich auch Belaria, Ditrema, Heliomorpha (=Dimorpha), Paralieberkuehnia
 * Massisteridae Cavalier-Smith 1993
 * Clathrulinidae Claus 1874 [Desmothoracida Hertwig & Lesser 1874 ]
 * Chlorarachnea Hibberd & Norris, 1984
 * Endomyxa Cavalier-Smith 2002, emend. Bass & Berney in Adl et al. 2019
 * Vampyrellida West 1901, emend. Hess et al. 2012
 * Phytomyxea Engler & Prantl, 1897
 * Plasmodiophorida Cook, 1928
 * Phagomyxida Cavalier-Smith 1993
 * Filoreta Bass & Cavalier-Smith, 2009
 * Gromia Dujardin, 1835
 * Ascetosporea Sprague 1979, emend. Cavalier-Smith 2009
 * Haplosporida Caullery & Mesnil, 1899
 * Microcytida Hartikainen et al. 2013
 * Paramyxida Chatton, 1911
 * Claustrosporidium Larsson, 1987
 * Paradiniidae Schiller 1935
 * Retaria Cavalier-Smith 2002
 * Foraminifera d’Orbigny 1826
 * Incertae sedis Foraminfera: Lagenida Delage & Hérouard 1896
 * Incertae sedis Foraminfera: Heterogromia, Komokiacea
 * Monothalamea Pawlowski et al. 2013
 * Tubothalamea Pawlowski et al. 2012
 * Miliolida Delage & Hérouard 1896
 * Spirillinida Hohenegger & Piller 1975
 * Ammodiscidae Reuss 1862
 * Globothalamea Pawlowski et al. 2012
 * Rotaliida Delage & Hérouard 1896
 * Planorbulinidae Schwager 1877
 * Discorboidea Ehrenberg 1838
 * Discorbidae Ehrenberg 1838
 * Rosalinidae Reiss, 1963
 * Rotalioidea Ehrenberg 1839 emend. Pawlowski 2013
 * Elphidiidae Galloway 1933
 * Ammoniidae Saidova, 1981
 * Elphidiellidae Holzmann & Pawlowski 2017
 * Haynesinidae Mikhalevich 2013
 * Incertae sedis Rotalioidea: Cribroelphidium, „Elphidium“, Protelphidium
 * Glabratelloidea Loeblich & Tappan, 1964
 * Rotaliellidae Loeblich & Tappan, 1964
 * Buliminoididae Seiglie, 1970
 * Glabratellidae Loeblich & Tappan, 1964
 * Calcarinoidea Schwager, 1876
 * Calcarinidae Schwager, 1876
 * Nummulitoidea de Blainville, 1827
 * Nummulitidae de Blainville, 1827
 * Serioidea Holzmann & Pawlowski 2017
 * Uvigerinidae Haeckel, 1894
 * Bolivinitidae Glaessner, 1937
 * Cassidulinidae d’Orbigny, 1839
 * Sphaeroidinidae Cushman, 1927
 * Globobuliminidae Cushman, 1927
 * Incertae sedis Rotaliida:
 * Nonionidae Schultze, 1854
 * Virgulinellidae Loeblich & Tappan, 1984
 * Buliminidae Jones, 1875
 * Epistominellidae Holzmann & Pawlowski 2017
 * Stainforthiidae Reiss, 1963
 * Cibicididae Cushman, 1927
 * Chilostomellidae Brady, 1881
 * Pullenidae Schwager, 1877
 * Nuttalidae Saidova, 1981
 * Discorbinellidae Sigal, 1952
 * Astrononionidae Cushman & Edwards, 1937
 * Oridorsalidae Loeblich & Tappan, 1984
 * Melonidae Holzmann & Pawlowski 2017
 * Cymbaloporidae Cushman 1927
 * Rubratelliidae Holzmann & Pawlowski 2017
 * Murrayinelliidae Holzmann & Pawlowski 2017
 * Globigerinida Delage & Hérouard 1896
 * Robertinida Loeblich & Tappan 1984
 * Textulariida Delage & Hérouard 1896
 * Carterina Brady 1884 [Carterinida Loeblich & Tappan 1981 ]
 * Radiolaria Müller 1858, sensu Adl et al., 2005
 * Acantharea Haeckel 1881, emend. Mikrjukov 2000
 * Chaunocanthida Schewiakoff 1926
 * Holocanthida Schewiakoff 1926
 * Symphyacanthida Schewiakoff 1926
 * Arthracanthida Schewiakoff 1926
 * Taxopodida Fol 1883
 * Polycystinea Ehrenberg 1838, emend. Haeckel 1887
 * Spumellaria Ehrenberg 1875, Haeckel 1887, emend. Riedel 1967
 * Nassellaria Ehrenberg 1875, emend. Haeckel 1887
 * Collodaria Haeckel 1887
 * Aquavolonida Bass & Berney, 2018
 * Aquavolon Tikhonenkov, Mylnikov, & Bass, 2018
 * Tremula Howe et al. 2011 [=Tremulida Howe et al. 2011 ]

Incertae sedis Eukarya

 * „Excavates“ [Excavata Cavalier-Smith 2002, emend. Simpson 2003 ] 
 * Discoba Simpson in Hampl et al., 2009
 * Jakobida Cavalier-Smith, 1993
 * Andalucina Cavalier-Smith, 2013
 * Andaluciidae Cavalier-Smith, 2013
 * Stygiellidae Pánek et al. 2016
 * Histionina Cavalier-Smith 2013
 * Tsukubamonadida Yabuki et al., 2011
 * Heterolobosea Page & Blanton 1985
 * Pharyngomonada Cavalier-Smith 2008
 * Tetramitia Cavalier-Smith, 1993
 * Selenaionidae Hanousková et al. 2018
 * Neovahlkampfiidae Hanousková et al. 2018
 * Eutetramitia Hanousková et al. 2018
 * Vahlkampfiidae Jollos 1917
 * Gruberellidae Page & Blanton 1985
 * Acrasidae Poche, 1913
 * Percolomonadidae Cavalier-Smith, 2008
 * Psalteriomonadidae Cavalier-Smith, 1993
 * Stephanopogonidae Corliss, 1961
 * Creneidae Pánek, et al. 2014
 * Tulamoebidae Kirby et al. 2015
 * Euglenozoa Cavalier-Smith 1981, emend. Simpson 1997
 * Euglenida Butschli 1884, emend. Simpson 1997
 * Heteronematina Leedale 1967
 * Aphagea Cavalier-Smith, 1993, emend. Busse & Preisfeld, 2002
 * Euglenophyceae Schoenichen 1925, emend. Marin & Melkonian 2003 [Euglenea Butschli 1884, emend. Busse & Preisfeld 2002 ]
 * Rapaza Yamaguchi et al. 2012
 * Eutreptiales Leedale 1967, emend. Marin & Melkonian 2003
 * Euglenales Leedale 1967, emend. Marin & Melkonian 2003
 * Phacaceae Kim et al. 2010
 * Euglenaceae Dujardin 1841, emend. Kim et al. 2010
 * Diplonemea Cavalier-Smith 1993, emend. Simpson 1997
 * Diplonemidae Cavalier-Smith, 1993, emend. Adl et al. 2019
 * Hemistasiidae Cavalier-Smith, 2016 emend. Adl et al. 2019
 * Eupelagonemidae Okamoto & Keeling, 2018
 * Symbiontida Yubuki et al. 2009
 * Kinetoplastea Honigberg 1963
 * Incertae sedis Kinetoplastea: Bordnamonas, Cephalothamnium, Rhynchoidomonas
 * Prokinetoplastina Vickerman in Moreira et al. 2004
 * Metakinetoplastina Vickerman in Moreira et al. 2004
 * Neobodonida Vickerman in Moreira et al. 2004
 * Parabodonida Vickerman in Moreira et al. 2004
 * Eubodonida Vickerman in Moreira et al. 2004
 * Trypanosomatida Kent 1880, emend. Vickerman in Moreira et al. 2004
 * Leishmaniinae Maslov & Lukeš, 2012
 * Malawimonadidae O’Kelly & Nerad 1999
 * Metamonada Grassé 1952 emend. Cavalier-Smith 1987
 * Incertae sedis Metamonada: Barthelona Bernard, Simpson & Patterson, 2000
 * Fornicata Simpson, 2003
 * „Organismy podobné Carpediemonas“ Kolisko et al. 2010
 * Diplomonadida Wenyon, 1926
 * Hexamitinae Kent, 1880
 * Giardiinae Kulda & Nohýnková, 1978
 * Retortamonadida Grassé, 1952
 * Caviomonadidae Cavalier-Smith, 2013
 * Parabasalia Honigberg, 1973
 * Incertae sedis Parabasalia: Tricercomitus Kirby, 1930
 * Trichomonadida Kirby, 1947
 * Honigbergiellida Čepička et al., 2010
 * Hypotrichomonadida Čepička et al., 2010
 * Tritrichomonadida Čepička et al., 2010
 * Cristamonadida Brugerolle & Patterson, 2001
 * Spirotrichonymphida Grassé, 1952
 * Lophomonadida Light, 1927
 * Trichonymphida Poche, 1913
 * Preaxostyla Simpson 2003
 * Oxymonadida Grassé 1952
 * Trimastigidae Saville Kent, 1880–1882
 * Paratrimastigidae Zhang et al. 2015
 * „CRuMs“ Brown et al., 2018 [Varisulca Cavalier-Smith 2012 (schließen auch Ancyromonadida ein, k\onnen paraphyletisch sein)]
 * Incertae sedis CRuMs: Glissandra Patterson & Simpson, 1996
 * Collodictyonidae Brugerolle et al. 2002, emend. Adl et al. 2019 [Diphylleidae Cavalier-Smith 1993 ; Diphylleida Cavalier-Smith 1993 ; Diphyllatea Cavalier-Smith 2003 ; Sulcomonadidae Cavalier-Smith 2013 ]
 * Rigifilida Cavalier-Smith in Yabuki et al. 2012
 * Mantamonas Cavalier-Smith & Glücksman in Glücksman et al. 2011
 * Ancyromonadida Cavalier-Smith 1998 [=Planomonadida Cavalier-Smith 2008 ]
 * Hemimastigophora Foissner et al. 1988
 * Incertae sedis Hemimastigophora: Paramastix Skuja 1948
 * Spironemidae Doflein 1916
 * Meteora Hausmann et al. 2002
 * Incertae sedis Eukarya: Acinetactis, Actinastrum, Actinocoma, Actinolophus, Adinomonas, Aletium, Amphimonas, Amylophagus, Anaeramoeba, Aphelidiopsis, Asterocaelum, Asthmatos, Aurospora, Barbetia, Belaria, Belonocystis, Bertarellia, Bertramia, Bodopsis, Boekelovia, Branchipocola, Camptoptyche, Chalarodora, Cibdelia, Cichkovia, Cinetidomyxa, Cingula, Cladomonas, Clathrella, Codonoeca, Coelosporidium, Copromonas, Cyanomastix, Cyclomonas, Cytamoeba, Dallingeria, Dictyomyxa, Dimastigamoeba, Dinemula, Dinoasteromonas, Diplocalium, Diplomita, Diplophysalis, Diploselmis, Dobellina, Ducelleria, Ectobiella, Elaeorhanis, Embryocola, Endamoeba, Endemosarca, Endobiella, Endomonas, Endospora, Enteromyxa, Eperythrocytozoon, Errera, Fromentella, Gymnococcus, Gymnophrydium, Haematotractidium, Hartmannina, Heliobodo, Heliomonas, Hermisenella, Heterogromia, Hillea, Hyalodaktylethra, Immunoplasma, Isoselmis, Janickina, Kamera, Kiitoksia, Lagenidiopsis, Liegeosia, Luffisphaera, Lymphocytozoon, Lymphosporidium, Macappella, Magosphaera, Malpighiella, Martineziella, Megamoebomyxa, Meringosphaera, Microcometes, Monochrysis, Monodus, Mononema, Myrmicisporidium, Naupliicola, Nephrodinium, Neurosporidium, Orbulinella, Ovicola, Palisporomonas, Pansporella, Paradinemula, Paraluffisphaera, Paramonas, Paraplasma, Parastasia, Parastasiella, Peliainia, Peltomonas, Petasaria, Phagodinium, Phanerobia, Phloxamoeba, Phyllomitus, Phyllomonas, Physcosporidium, Piridium, Pleuophrys, Pleuromastix, Protenterospora, Protomonas, Pseudoactiniscus, Pseudosporopsis, Rhizomonas, Rhynchodinium, Rigidomastix, Schewiakoffia, Sergentella, Serpentoplasma, Sphaerasuctans, Spongastericus, Spongocyclia, Stephanomonas, Strobilomonas, Tetradimorpha, Tetragonidium, Thaulirens, Topsentella, Toshiba, Trichonema, Urbanella