User:Huileixu/Bioinformatics Tools to Build and Analyze Intracellular Regulatory Networks

High-throughput data from experiments, and algorithms for reconstruction of biological networks, at different layer of regulation, allow for system-wide reconstruction of biological networks. To support molecular, cell and systems biology communities, a comprehensive repository of databases and complimentary computational tools are collected in this page. In general they fall into six categories:  MicroRNA-target mRNA prediction tools Protein-protein interaction databases Protein phosphorylation databases and prediction tools Enrichment analysis tools Signaling-pathway databases Network visualization tools 