User:Jarett.anderson/sandbox

Voltage-gated ion channels are a class of transmembrane proteins that form ion channels that are activated by changes in the electrical membrane potential near the channel. The membrane's potential is often altered by ions crossing the cell membrane due to ligand-gated channels, which open upon binding from a specific molecule rather than a change in membrane potential.. '''Cells generally have more positively charged outside the cell than inside, and there are likewise more negatively charged ions inside of a cell than outside. This difference across the membrane creates a voltage known as the resting membrane potential. Changes in the membrane potential alter the conformation of the proteins of voltage-gated channels''', regulating their opening and closing. Cell membranes are generally impermeable to ions, thus they must diffuse through the membrane through transmembrane protein channels. They have a crucial role in excitable cells such as neuronal and muscle tissues, allowing a rapid and co-ordinated depolarization in response to triggering voltage change. Found along the axon and at the synapse, voltage-gated ion channels directionally propagate electrical signals. Voltage-gated ion-channels are usually ion-specific, and channels specific to sodium(Na+), potassium (K+), calcium (Ca2+), and chloride (Cl–) ions have been identified. The opening and closing of the channels are triggered by changing ion concentration, and hence charge gradient, between the sides of the cell membrane.

Contents
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 * 1Structure
 * 2Mechanism
 * 3Different types
 * 3.1Sodium (Na+) channels
 * 3.2Calcium (Ca2+) channels
 * 3.3Potassium (K+) channels
 * 3.4Chloride (Cl−) channels
 * 3.5Proton (H+) channels
 * 4Phylogenetics
 * 5See also
 * 6References
 * 7External links

Structure[edit]
Further information: Cation channel superfamily Conformation of the four homologous domains showing the formation of a central pore Voltage-gated ion channels are generally composed of several subunits arranged in such a way that there is a central pore through which ions can travel down their electrochemical gradients. The channels tend to be ion-specific, although similarly sized and charged ions may sometimes travel through them. The functionality of voltage-gated ion channels is attributed to its three main discrete units: the voltage sensor, the pore or conducting pathway, and the gate. Na+, K+, and Ca2+ channels are composed of four transmembrane α-subunits arranged around a central pore. The membrane-spanning segments, designated S1-S6, all take the form of alpha helices with specialized functions. The fifth and sixth transmembrane segments (S5 and S6) and pore loop serve the principal role of ion conduction, comprising the gate and pore of the channel, while S1-S4 serve as the voltage-sensing region. The four subunits may be identical, or different from one another. In addition to the four central α-subunits, there are also regulatory β-subunits, with oxidoreductase activity, which are located on the inner surface of the cell membrane and do not cross the membrane, and which are coassembled with the α-subunits in the endoplasmic reticulum.

Mechanism[edit]
Crystallographic structural studies of a potassium channel have shown that, when a potential difference is introduced over the membrane, the associated electric field induces a conformational change in the potassium channel. The conformational change distorts the shape of the channel proteins sufficiently such that the cavity, or channel, opens to allow influx or efflux to occur across the membrane. This movement of ions down their concentration gradients subsequently generates an electric current sufficient to depolarize the cell membrane.

Voltage-gated sodium channels and calcium channels are made up of a single polypeptide with four homologous domains. Each domain contains 6 membrane spanning alpha helices. One of these helices, S4, is the voltage sensing helix. The S4 segment contains many positive charges such that a high positive charge outside the cell repels the helix, keeping the channel in its closed state.

In general, the voltage sensing portion of the ion channel is responsible for the detection of changes in transmembrane potential that trigger the opening or closing of the channel. The S1-4 alpha helices are generally thought to serve this role. In potassium and sodium channels, voltage-sensing S4 helices contain positively-charged lysine or arginine residues in repeated motifs. In its resting state, half of each S4 helix is in contact with the cell cytosol. Upon depolarization, the positively-charged residues on the S4 domains move toward the exoplasmic surface of the membrane. It is thought that the first 4 arginines account for the gating current, moving toward the extracellular solvent upon channel activation in response to membrane depolarization. The movement of 10–12 of these protein-bound positive charges triggers a conformational change that opens the channel. The exact mechanism by which this movement occurs is not currently agreed upon, however the canonical, transporter, paddle, and twisted models are examples of current theories.

Movement of the voltage-sensor triggers a conformational change of the gate of the conducting pathway, controlling the flow of ions through the channel.

The main functional part of the voltage-sensitive protein domain of these channels generally contains a region composed of S3b and S4 helices, known as the "paddle" due to its shape, which appears to be a conserved sequence, interchangeable across a wide variety of cells and species. A similar voltage sensor paddle has also been found in a family of voltage sensitive phosphatases in various species. Genetic engineering of the paddle region from a species of volcano-dwelling archaebacteria into rat brain potassium channels results in a fully functional ion channel, as long as the whole intact paddle is replaced. This "modularity" allows use of simple and inexpensive model systems to study the function of this region, its role in disease, and pharmaceutical control of its behavior rather than being limited to poorly characterized, expensive, and/or difficult to study preparations.

Although voltage-gated ion channels are typically activated by membrane depolarization, some channels, such as inward-rectifier potassium ion channels, are activated instead by hyperpolarization.

The gate is thought to be coupled to the voltage sensing regions of the channels and appears to contain a mechanical obstruction to ion flow. While the S6 domain has been agreed upon as the segment acting as this obstruction, its exact mechanism is unknown. Possible explanations include: the S6 segment makes a scissor-like movement allowing ions to flow through, the S6 segment breaks into two segments allowing of passing of ions through the channel, or the S6 channel serving as the gate itself. The mechanism by which the movement of the S4 segment affects that of S6 is still unknown, however it is theorized that there is a S4-S5 linker whose movement allows the opening of S6.

Inactivation of ion channels occurs within milliseconds after opening. Inactivation is thought to be mediated by an intracellular gate that controls the opening of the pore on the inside of the cell. This gate is modeled as a ball tethered to a flexible chain. During inactivation, the chain folds in on itself and the ball blocks the flow of ions through the channel.Fast inactivation is directly linked to the activation caused by intramembrane movements of the S4 segments, though the mechanism linking movement of S4 and the engagement of the inactivation gate is unknown.

Different types[edit]
Although voltage-gated ion channels are typically activated by membrane depolarization, some channels, such as inward-rectifier potassium ion channels, are activated instead by hyperpolarization.

The gate is thought to be coupled to the voltage sensing regions of the channels and appears to contain a mechanical obstruction to ion flow.While the S6 domain has been agreed upon as the segment acting as this obstruction, its exact mechanism is unknown. Possible explanations include: the S6 segment makes a scissor-like movement allowing ions to flow through, the S6 segment breaks into two segments allowing of passing of ions through the channel, or the S6 channel serving as the gate itself. The mechanism by which the movement of the S4 segment affects that of S6 is still unknown, however it is theorized that there is a S4-S5 linker whose movement allows the opening of S6.

Inactivation of ion channels occurs within milliseconds after opening. Inactivation is thought to be mediated by an intracellular gate that controls the opening of the pore on the inside of the cell. This gate is modeled as a ball tethered to a flexible chain. During inactivation, the chain folds in on itself and the ball blocks the flow of ions through the channel. Fast inactivation is directly linked to the activation caused by intramembrane movements of the S4 segments, though the mechanism linking movement of S4 and the engagement of the inactivation gate is unknown.

Sodium (Na+) channels[edit]
Sodium channels have similar functional properties across many different cell types. While ten human genes encoding for sodium channels have been identified, their function is typically conserved between species and different cell types.

Calcium (Ca2+) channels[edit]
With sixteen different identified genes for human calcium channels, this type of channel differs in function between cell types. Ca2+ channels produce action potentials similarly to Na+ channels in some neurons. They also play a role in neurotransmitter release in pre-synaptic nerve endings. In most cells, Ca2+ channels regulate a wide variety of biochemical processes due to their role in controlling intracellular Ca2+ concentrations. Calcium is also important for its role as a signaling or second messenger ion which initiates multiple cascades throughout the human and animal body . There are three subfamilies of voltage-gated channels, known as CaV1, CaV2, and CaV3. '''CaV1 channels are found in skeletal, cardiac, and smooth muscle, and are responsible for excitation-contraction coupling, which is the process by which an electrical stimulus is converted into a mechanical response. CaV2 channels are those channels which play a role in neurotransmitter release mentioned above. CaV3 channels are used to repetitively fire action potentials in rhythmic succession. These rhythmic action potentials serve many purposes, such as controlling sleep, secreting hormones, and generating the rhythmic heartbeat by way of the sino-atrial node. Because the functions of these calcium channels play such crucial roles, complex mechanisms to maintain homeostatic levels of calcium in the cell's cytoplasm have evolved in the human body'''

Potassium (K+) channels[edit]
Potassium channels are the largest and most diverse class of voltage-gated channels, with over 100 encoding human genes. These types of channels differ significantly in their gating properties; some inactivating extremely slowly and others inactivating extremely quickly. This difference in activation time influences the duration and rate of action potential firing, which has a significant effect on electrical conduction along an axon as well as synaptic transmission. Potassium channels differ in structure from the other channels in that they contain four separate polypeptide subunits, while the other channels contain four homologous domain but on a single polypeptide unit.

Chloride (Cl−) channels[edit]
Chloride channels are present in all types of neurons. With the chief responsibility of controlling excitability, chloride channels contribute to the maintenance of cell resting potential and help to regulate cell volume.

Proton (H+) channels[edit]
Voltage-gated proton channels carry currents mediated by hydrogen ions in the form of hydronium, and are activated by depolarization in a pH-dependent manner. They function to remove acid from cells. '''Much is still being discovered concerning the structure and function of the voltage-gated proton channel. When activated, the voltage-gated proton channel HV1 can allow up to 100,000 hydrogen ions across the membrane each second . Whereas most voltage-gated ion channels contain a central pore that is surrounding by alpha helices and the voltage-sensing domain (VSD), voltage-gated hydrogen channels contain no central pore . These voltage-gated hydrogen channels only carry outward current, meaning they are used to move acidic protons out of the membrane. As a result, the opening of voltage-gated hydrogen channels usually hyperpolarize the cell membrane, or makes the membrane potential more negative. A recent discovery has shown that the voltage-gated proton channel Hv1 is highly expressed in human breast tumor tissues that are metastatic, but not in non-metastatic breast cancer tissues . Because it has also been found to be highly expressed in other cancers , the study of the voltage-gated proton channel has led many scientists to wonder what its importance is in cancer metastasis.'''

Pharmacological significance
'''Voltage-gated ion channels have recently become drug targets due to their specificity and selectivity of ions. For example, the voltage-gated sodium channel subsets NaV1.7, NaV1.8, and NaV1.9 have all been suggested to play a role in neuropathic pain, whereas NaV1.6 is thought to be a contributor to Amyotrophic Lateral Sclerosis (ALS) due to its persistent sodium current. Drugs that block T-type calcium channels are often used in migraine treatment . The mechanism by which many of these blockers work is still largely unknown, although two different mechanisms, tonic and phasic block, have been proposed .'''

'''While drugs are being developed to modify voltage-gated channels in a way that help the human body to function at a higher level, harmful channel blockers have also been identified. Ethanol has been shown to be known L-type voltage-gated calcium channel blocker at concentrations equivalent to legal intoxication''' [12].

James Burton suggestions:

so I was looking through wikipedia and I noticed that there is a dedicated page for "Calcium Channels." It outlines the voltage gated and ligand gated channels and has references to the Ca1, Ca2, and Ca3 channel families. The Cav1.1, 1.2, 1.3, 1.4, 2.1, 2.2, 2.3, 3.1, 3.2, 3.3 channels each have their own wikipedia pages. Maybe you could/should reference the "Calcium channel" page.

I also found a really long wikipedia page called "Voltage-dependent calcium channel" that goes into detail on the stuff you are discussing. Maybe instead of going into depth on the different types of calcium channels, you could reference that page, because it looks pretty thorough, just from glancing over it. For this page (voltage gated ion channel), you could discuss some of the general pharmacological implications of activating the channels, but avoid discussing specific channel types, because that is already covered on other wikipedia pages that you can simply reference.

For the proton channel edit, I would maybe leave out the part about being discovered in 2006. It might just be a personal opinion, but I dont feel like it fits in this type of article. Usually wiki articles do not include little tidbits about the history of discovery like that. If you feel it is necessary to convey something about the channel, like how small or rare or hard to find they are, maybe include that. otherwise, i would probably leave it out.

= Peer Review by Kent Christensen = Looks great Jarett. You have a substantial amount of material and I think this page will be much better after you make the changes you're planning. I agree with James that you should cite from the calcium channel page--whoever is working on that seems to be doing a great job. My only suggestion is to remember to include a figure with your changes. Let me know if you have any questions/ideas about finding a picture for this, and I will be happy to discuss them as we have somewhat related topics. Keep up the stellar work. Ride or die baby (talk) 19:04, 28 November 2017 (UTC)