User:Jts1882/sandbox/test/Phylogeny

Classification of life standard (Ruggieri et al 2016)

The classification of life is a heirarchical organisation of the more than 1.6 million species that have been characterised and listed in the Catalogue of Life (CoL).

=Project=

=Listing= = section
 * section

Eukarotes
Some good trees:


 * SAR_supergroup (Harosa)
 * Heterokont
 * Brown_algae
 * Rhizaria
 * Alveolate]

Missing: Excavata

Plants

 * Archaeplastida (general scheme)
 * no decent trees for Rhodaphyta and Glaucaphyta
 * Chlorophyta
 * Green_algae (Viridiplantae)
 * Prasinophyceae
 * Embryophyte
 * Marchantiophyta (liverworts)
 * Moss (bryophyta)
 * Hornwort
 * Polysporangiophyte
 * Vascular_plant (vascular plants)
 * Spermatophyte
 * Flowering_plant

Fish
Some cladograms of fishes on wikipedia:


 * Gnathostomata


 * Evolution_of_fish
 * Evolution_of_fish
 * Chondrichthyes (not clade diagram; Palaeos?)
 * Osteichthyes(bony fish)
 * Actinopterygii (ray-finned fish]]
 * Teleost
 * Neoteleostei
 * Acanthopterygii
 * Percomorpha

Subphylum Vertebrata └─Infraphylum Gnathostomata ├─Placodermi — extinct (armored gnathostomes) └Eugnathostomata (true jawed vertebrates) ├─Acanthodii (stem cartilaginous fish) └─Chondrichthyes (true cartilaginous fish) ├─Holocephali (chimaeras + several extinct clades) └Elasmobranchii (shark and rays) ├─Selachii (true sharks) └─Batoidea (rays and relatives)
 * Sarcopterygii (lobe-finned fish)

Reptiles
Reptile cladograms on wikipedia:

Extant reptiles
 * Reptile (scheme including main extinct groups)(illustrated); could separate crown reptiles)
 * Sauropterygia (two reptile classifications,
 * one with testudines basal and a large clade of extinct marine reptiles (including ichthyosaurs and sauropterans) as sister to the rest of extant reptiles (lepido- and archo-sauromorpha)
 * a second showing an arrange with the testudines repositioned in Archosauromorpha after Lee 2013
 * Ichthyopterygia (ichthyosaurs based on Cuthbertson et al., 2013; could be combined with above to give both main branches)
 * Placodontiformes
 * Plesiosauria
 * Pistosauria
 * Archosauromorpha (two arrangements)
 * Pantestudinata(two schemes, placed within Archo- and lepido-sauromorpha, respectively) for withinTestudinata (extinct forms to genus level)
 * Parareptilia (three schemes)
 * others in Diapsid, Neodiapsid with lots of redundancy (use templates)
 * Sauropsida (again supposedly based on Lee 2013)
 * Archosauriformes (two schemes, including a detailed one that links to non-expanded sections]]
 * Suchia (two trees)


 * Squamata (this is a good example that can be broken up into templates and then the other phylogeny articles can also get the trees transcluded).
 * Iguania
 * Snake
 * Turtles
 * Rhynchocephalia (tuataras and extinct relatives)
 * Crocodilia (to Genus)

Mammals

 * Synapsid (early mammals and extinct relatives)

Laurasiatheria
Cetartiodactyla (includes even-toed ungulates (Artiodactyla) and Cetacea (whales and dolphins))

Felidae
Molecular phylogenetic analysis suggests that living (extant) felids fall into eight lineages (clades).

The eight lineages divide between these as follows:


 * Subfamily Pantherinae:
 * Lineage 1 (Panthera lineage): Panthera, Neofelis
 * Subfamily Felinae:
 * Lineage 2 (Bay cat lineage): Pardofelis, Catopuma
 * Lineage 3 (Caracal lineage): Leptailurus, Caracal (including Profelis)
 * Lineage 4 (Ocelot cat lineage): Leopardus
 * Lineage 5 (Lynx lineage): Lynx
 * Lineage 6 (Puma lineage): Puma, Acinonyx
 * Lineage 7 (Leopard cat lineage): Prionailurus, Otocolobus
 * Lineage 8 (Domestic cat lineage): Felis

In 2006, Johnson et al. presented the following cladogram (the genera shown are those included in the analysis):