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1862 infantry units
Commanding officers: Brigadier Generals: Adjutant general: Jones S. Hamilton Chief of Ordnance, Pierre S. Layton Quartermaster general, A.M. West
 * Major General Tullius C. Tupper (1862-1863)
 * Major General Samuel J. Gholson (1863-1864)
 * Micajah F. Berry
 * Charles E. Smedes
 * Richard H. Winter
 * Benjamin M. Bradford
 * James Z. George (1862-1863)

1862 cavalry units
In addition, other cavalry companies formed in 1862 for State Troops service which were later converted to Confederate service include: Other State Troop cavalry companies:
 * Johnson's Cavalry Company
 * Matthew's Battalion Cavalry
 * Outlaw's Battalion - Partisan Rangers
 * Yazoo Battalion, Lt. Col. Charles F. Hamer
 * Saunder's Battalion, Maj. B.F. Saunders
 * Street's Battalion. Maj. Solomon G. Street, merged into Fifteenth Tennessee Cavalry.

1864 infantry units
First Regiment, Infantry, Col. William S. Patton, Lt. Col. Samuel M. Meek. Organized August 24, 1864. 9 companies from Kemper, Noxubee, Lowndes, Winston, Leake, and Neshoba Counties.

Second Regiment, Infantry, Col. Greene C. Chandler, Lt. Col. William L. Cole. Organized September 2, 1864.
 * Company A, Enterprise and Macon
 * Company B, Wayne County
 * Company C, Macon
 * Company D, Paulding
 * Company E, Jasper County
 * Company F, Clarke County
 * Company G, Starkville
 * Company H, Macon
 * Company I, Ruckersville
 * Company K, Monroe City
 * Company L, Jasper City
 * Company M, Oktibbeha
 * Company O, Jones County

Third Regiment, Infantry, Col. James Summerville, Lt. Col. William Buckner, 10 companies.

First Battalion, Infantry, Lt. Col. J.Y. Harper. Organized August 20–31, 1864, 8 companies.

1864 Cavalry units
First Regiment, Cavalry Col. Hezekiah William Foote, Lt. Col. W.P. Malone. 11 companies, organized summer 1864.

Second Regiment, Cavalry Co. J.L.J Hill, Lt. Col. Merriman Pounds, organized 13 September 1864.

Third Regiment, Cavalry Col. W.K. Easterling. Organized August 30, 1864. 10 companies.

Fourth Regiment, Cavalry Col. E.S. Fisher, Lt. Col. A.S. Pass. Organized September 6, 1864. 11 companies.

First Battalion, Cavalry Maj. John. E. McNair. Organized September 1864. 5 companies.

Third Battalion, Cavalry Capt. D.G. Cooper. 4 companies.

Pettus's Battalion, Cavalry Maj. John J. Pettus (former Governor of Mississippi), organized September 1864. 4 companies.

Unattached cavalry companies led by:
 * Capt. W.A.J. Boon
 * Capt. H.H. Gavin
 * Capt. W.G. Grace
 * Capt. F.M. Shields
 * Capt. John Kelly
 * Capt. W.G. Caperton
 * Capt. C.M. Doss