User:M2bioinfo-Orsay/sandbox/team3

= Riboswitch s0670 =

The s0670 family was defined with the rfam cloud pipeline from the CD630_s0670 nucleotide sequence which is a non-coding RNA of the pathogenic bacteria Clostridium difficile 630 revealed by RNA-seq and differential 5'-and RNA-seq analyses.

RNA of this family were found in the Firmicutes taxa and upstream of some genes which code for enzyme implicated in cellular amino acid metabolic process like the O-acetylhomoserine sulfhydrylase of Clostridium difficile (FQTY01000002.1 ⇒ en 5’ d’un gène O-acetylhomoserine sulfhydrylase SHE43394.1), the S-ribosylhomocysteinase LuxS of ?? (DS995361.1 ⇒ en 5’ du gène EEA84185.1), or the cysD gene of ?? (FMDO01000052.1 ⇒ en 5’ du gène SCG84166.1).

The seconday structure was predicted using the locaRNA alignement and with the Rscape prediction software.