User:Opabinia regalis/Articles

An out-of-date and probably incomplete list of articles I've contributed to in some way. Some old, some new, some all over the quality spectrum. If I put them on a list I might not forget to come back to them. See also the to-do list.

Cell biology
cell cycle

cell nucleus (ex-)

DNA repair (ex-)

exosporium

heat shock response

lysis

malate-aspartate shuttle

nematocyst (dinoflagellate)

nuclease protection assay

ocelloid

piston (subcellular structure)

processivity

proteasome

reporter gene

thermoacidophile

two-component regulatory system

virokine

Chemistry and biochemistry
2-furanone

adenosine triphosphate

alkalide

beta-peptide

biochemistry of Alzheimer's disease

butenolide

CHAPS detergent

cryptophycin

diffusive gradients in thin films

enzyme (rescue )

excimer

floridean starch

ginsenoside

hydrogen

Koelsch radical

linamarin

list of standard amino acids

micelle

orthohydrogen

parkeol

profenofos

proline

protein

peridinin

pseudoginsenoside F11

Computational biology
CAFASP

Chou-Fasman method

chemical file format

computational phylogenetics

covarion

dead-end elimination

EVA (benchmark)

Ewald summation

force field (chemistry)

flying ice cube

global distance test

GOR method

homology modeling

implicit solvation

LiveBench

loop modeling

MODELLER

molecular dynamics

molecular mechanics

multiple sequence alignment

phylogenetic tree

phylogenetics software

Poisson-Boltzmann equation

protein structure prediction

protein-protein interaction prediction

self-consistent mean field (biology)

sequence alignment (ex-)

secondary structure prediction

sequence alignment software

sequence profiling tool

statistical potential

STRIDE (protein)

structural alignment

tree rearrangement

Genetics
artificial selection

coalescent theory

crossbreed

gene

gene fixation

genetics glossary

HAT transposon

master regulator

mating-type region

overlapping gene

polinton

regulon

Miscellaneous
The Billion-Dollar Molecule

Leipzig University internship controversy

Lia (artist)

Nina Sellars

Physician-scientist

Redshift (software)

Scuticociliatosis

Standard Portable Intermediate Representation

undergraduate research journal

Nucleic acids
antisense RNA

base pair

chi site

cytoplasmic polyadenylation element

polypyrimidine tract

pseudoknot

RNA-induced transcriptional silencing

RNA interference

RNA silencing

stem-loop

systematic evolution of ligands by exponential enrichment

transcriptome

transfer RNA

Organisms (and viruses)
Acidilobus aceticus

Acidilobus saccharovorans

Bacteroides thetaiotaomicron

Drosophila X virus

Dysidea arenaria

Enhygromyxa salina

Erythropsidinium

Galdieria sulphuraria

Gemmata obscuriglobus

Gymnodiniales

hamster polyomavirus

human polyomavirus 6

human polyomavirus 7

human polyomavirus 9

human polyomavirus 12

Jingmenvirus

KI polyomavirus

Komagataeibacter xylinus

Lachancea thermotolerans

Miamiensis avidus

murine polyomavirus

MW polyomavirus

New Jersey polyomavirus

Oscillibacter valericigenes

P22 phage

planctomycetes

Plesiocystis

Plesiocystis pacifica

Polykrikaceae

Polyomaviridae

poribacteria

positive-strand RNA virus

Shimwellia blattae

STL polyomavirus

Sulfobacillus

Sulfobacillus thermosulfidooxidans

Vulcanodinium rugosum

Warnowiaceae

WU polyomavirus

Protein structure and folding
accessible surface area

alpha helix

alpha sheet

alpha solenoid

beta barrel

beta hairpin

beta helix

beta-propeller domain

beta sheet

conformational entropy

contact order

downhill folding

EF hand

folding funnel

globin fold

growth factor-like domain

helix bundle

helix-coil transition model

homeodomain fold

hydrophobic collapse

jelly roll fold

leucine-rich repeat

Lifson-Roig model

native contact

peptide plane flipping

phi value analysis

polyproline helix

post-translational modification

protein primary structure

protein quaternary structure

protein secondary structure

protein tertiary structure

Rossmann fold

Structural Classification of Proteins

thioredoxin fold

TIM barrel

trefoil knot fold

Zimm-Bragg model

Proteins and complexes
aggrecan

aggrecanase

agnoprotein

alpha secretase

amphinase

amyloid precursor protein

APH-1

argonaute

aspartokinase

Aspergillus nuclease S1

barnase

barstar

bovine pancreatic ribonuclease

capping enzyme

chalcone synthase

chromodomain

cleavage and polyadenylation specificity factor

cleavage stimulation factor

cleavage factor

coronavirus envelope protein

coronavirus membrane protein

coronavirus nucleocapsid protein

coronavirus spike protein

CPEB

cyclase

delta-cadinene synthase

DGCR8

dicer

DNA clamp

drosha

endonuclease V

enhanceosome

F-box protein

ferric uptake regulator family

FKBP

flippase

gankyrin

guanylyl transferase

heterogeneous ribonucleoprotein particle

histidine phosphotransfer domain

hslVU

intramembrane protease

irditoxin

isopeptidase

kappa bungarotoxin

kinome

large tumor antigen

major capsid protein VP1

Microprocessor complex

middle tumor antigen

minor capsid proteins VP2 and VP3

neprilysin

nicastrin

PABPII

paired receptors

pancreatic ribonuclease

parvulin

PEN-2

peridinin-chlorophyll-protein complex

pilin

piwi

piwi-interacting RNA

polyadenine polymerase

presenilin

prolyl isomerase

protein K (gene expression)

protein K (porin)

ranpirnase

response regulator

ribonuclease T

ribonuclease T1

ribonuclease T2

ribonuclease V1

RNA silencing suppressor p19

Rop protein

SAE2 (yeast)

small tumor antigen

spike protein

squalene-hopene cyclase

three-finger protein

three-finger toxin

tubby protein

UBA protein domain

ubiquitin-activating enzyme

ubiquitin-binding domain

ubiquitin-conjugating enzyme

villin

viroporin

YqeY protein domain

zinc uptake regulator

ZinT protein domain

ZnuABC

Scientific institutions and companies
Accelrys

American Society for Virology

Edward Bouchet Abdus Salam Institute

Frederick National Laboratory for Cancer Research

National Institute of Diabetes and Digestive and Kidney Diseases

Sirna Therapeutics

Strangeways Research Laboratory

Scientists
Janet Abbate

Rommie Amaro

Kimball Chase Atwood III

Jean Bacon

David Baker (biochemist)

Abraham Clifford Barger

Floyd Bartell

Lawrence Bartell

Brenda L. Bass

Annette Beck-Sickinger

Max Birnstiel

Virgil Boekelheide

Michael Botchan

Alexander E. Braunstein

Lawrence O. Brockway

Gene Brown (professor)

Axel T. Brunger

Erick M. Carreira

Geoffrey Chang

Cornelia Channing

Purnell W. Choppin

Judy Clapp

G. Marius Clore (AfC reviewer)

Mary Collins (immunologist)

Minor J. Coon

Nancy Craig

Valerie Daggett

John Danesh

Leodis Davis

Rina Dechter

John T. Dingle

William Eaton (scientist)

Scott V. Edwards

Herman Eisen

Philip J. Elving

Juli Feigon

Honor Fell

Susan Ferro-Novick

Kathryn Ferguson Fink

Robert Morgan Fink

Douglas J. Futuyma

Michael Green (biologist)

Michel E. Goldberg

Eric Gouaux

Albert Baird Hastings

Peter Hausen

Robert L. Hill (biochemist)

Robert Horne (virologist)

Catherine T. Hunt

Richard Hynes

Wolfgang Joklik

Hilary Kahn

C. Frederick Koelsch

Elmer Peter Kohler

Arthur Konnerth

Lloyd M. Kozloff

Moses Kunitz

M. Daniel Lane

Frederic Schiller Lee

Ruth Lehmann

Cecilia Lo

Ariel G. Loewy

Boris Magasanik

Christine Mannhalter

Stephen L. Mayo

Thomas C. Merigan

David E. Metzler

Ronald E. Mickens

Herschel K. Mitchell

Bernard Moss

Howard Nash

Frederick C. Neidhardt

Peter Novick (scientist)

James Nowick

Dinshaw Patel

David Pressman (scientist)

David Relman

Drummond Rennie

Jennifer Richeson

Ferruccio Ritossa

Phillips Robbins

Sally Rockey

Griffin P. Rodgers

Hannele Ruohola-Baker

Mary-Lou Pardue

William Townsend Porter

Bernardo L. Sabatini

David D. Sabatini

Norman P. Salzman

Robert T. Sauer

Moselio Schaechter

Harold Scheraga

Milton Schlesinger

Sondra Schlesinger

Brenda Schulman

Klaus Schulten

David Israel Schuster

Neena Schwartz

Ernest Lyman Scott

Philip Siekevitz

Arthur M. Silverstein

David K. Smith

Lee Irvin Smith

Esmond Emerson Snell

Victor Snieckus

Frederick Gordon Spear

Lisa Steiner

Thomas Strangeways

Karel Svoboda (scientist)

Attila Szabo (scientist)

David W. Tank

Susan S. Taylor

Dennis Torchia

Hannah Valantine

Robert P. Wagner

Robert R. Wagner

Thomas Welton

Zena Werb

Arthur Whiteley

Helen Riaboff Whiteley

Hobart Hurd Willard

Ed Yong

Milton Zaitlin