User:Ppgardne/RNAML Hinxton Genome Campus RNA Journal Club

RNAML: RNA mailing list

 * Interested parties can sign up to the mailing list here and add their name to the list below.
 * We meet every second Thursday in room F301 at 14:00.
 * After an extensive democratic process it has been decided that preferred articles are short (ie. <4 pages) and contain original research (ie. review articles are not recommended). Try to aim for things like Nature "Letters" or Science "Reports", at least in the sense of relevance and length. Presenting your original research is also highly encouraged!

Volunteers - the next speaker is at the top of the list

 * Sergei Manakov (March 4)
 * Anton Enright (March 18)
 * Paul Gardner (April's fool)
 * Harpreet Saini
 * Stijn van Dongen
 * Jose Afonso Guerra Assuncao
 * Cei Abreu-Goodger
 * Albert Vilella

Some suggested articles for discussion:
{| class="wikitable" Ashesh A. et al. snoRNA, a Novel Precursor of microRNA in Giardia lamblia PLoS Pathog. 2008 Nov; 4(11): e1000224.
 * Article|| Volunteer
 * The cspA mRNA Is a Thermosensor that Modulates Translation of the Cold-Shock Protein CspA Reviewed by Breaker: RNA Switches Out in the Cold
 * A pH-responsive riboregulator || ???
 * Riboswitches in Eubacteria Sense the Second Messenger Cyclic Di-GMP || ???
 * Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution || ???
 * New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites || Anton
 * Coding-Sequence Determinants of Gene Expression in Escherichia coli || ???
 * Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis
 * Cara
 * Nagano T, Mitchell JA, et al. The Air Noncoding RNA Epigenetically Silences Transcription by Targeting G9a to Chromatin. Science. 2008 Nov 6.
 * Hirota et al. Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs. Nature 456 130-134.
 * Cei
 * Pandey RR, Mondal T, et al. Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. Mol Cell. 2008 Oct 24;32(2):232-46. AND/OR Kcnq1ot1/Lit1 Noncoding RNA Mediates Transcriptional Silencing by Targeting to the Perinucleolar Region
 * Grewal SI, Elgin SC Transcription and RNA interference in the formation of heterochromatin. Nature 447, 399-406 (2007).
 * Harpreet Saini
 * Ender C, et al. A Human snoRNA with microRNA-like functions. Molecular Cell 32, 519-528 (2008).
 * Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis
 * Cara
 * Nagano T, Mitchell JA, et al. The Air Noncoding RNA Epigenetically Silences Transcription by Targeting G9a to Chromatin. Science. 2008 Nov 6.
 * Hirota et al. Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs. Nature 456 130-134.
 * Cei
 * Pandey RR, Mondal T, et al. Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. Mol Cell. 2008 Oct 24;32(2):232-46. AND/OR Kcnq1ot1/Lit1 Noncoding RNA Mediates Transcriptional Silencing by Targeting to the Perinucleolar Region
 * Grewal SI, Elgin SC Transcription and RNA interference in the formation of heterochromatin. Nature 447, 399-406 (2007).
 * Harpreet Saini
 * Ender C, et al. A Human snoRNA with microRNA-like functions. Molecular Cell 32, 519-528 (2008).
 * Pandey RR, Mondal T, et al. Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. Mol Cell. 2008 Oct 24;32(2):232-46. AND/OR Kcnq1ot1/Lit1 Noncoding RNA Mediates Transcriptional Silencing by Targeting to the Perinucleolar Region
 * Grewal SI, Elgin SC Transcription and RNA interference in the formation of heterochromatin. Nature 447, 399-406 (2007).
 * Harpreet Saini
 * Ender C, et al. A Human snoRNA with microRNA-like functions. Molecular Cell 32, 519-528 (2008).
 * Harpreet Saini
 * Ender C, et al. A Human snoRNA with microRNA-like functions. Molecular Cell 32, 519-528 (2008).
 * Ender C, et al. A Human snoRNA with microRNA-like functions. Molecular Cell 32, 519-528 (2008).
 * Cei Abreu
 * Dinger M, et al. Differentiating Protein-Coding and Noncoding RNA: Challenges and Ambiguities. PLoS Comput Biol. 2008 Nov; 4(11): e1000176.
 * Guttman M, et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature advance online publication 1 February 2009.
 * Cei
 * Zhang et al. DNA Methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution. PLoS Genet. 2009 Mar; 5(3): 1000438. Epub 2009 Mar27.
 * Harpreet Saini
 * Cedar H and Bergman Y Linking DNA methylation and histone modifications: patterns and paradigms. Nat Rev Genet. 2009 Mar 24.
 * Harpreet Saini
 * Zhang et al. DNA Methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution. PLoS Genet. 2009 Mar; 5(3): 1000438. Epub 2009 Mar27.
 * Harpreet Saini
 * Cedar H and Bergman Y Linking DNA methylation and histone modifications: patterns and paradigms. Nat Rev Genet. 2009 Mar 24.
 * Harpreet Saini
 * Harpreet Saini