User:ProteinBoxBot/Phase 3

Overview
The goal of this phase of the ProteinBoxBot is to expand beyond the genes and proteins maintained in the Gene Wiki project to other biomedical concepts. Specifically, we are targeting human diseases and phenotypes, and drugs/compounds. Additional organization around SNPs and pathways are a possibility as well. Please add your ideas and suggestions below and/or contribute to the talk page!

Notes
 * User:ProteinBoxBot currently runs every two days to maintain gene/protein infoboxesGNF Protein box, and a similar time scale should be possible on all templates/parameters mentioned below.
 * All data in this Phase 3 proposal will likely go into Wikidata. Discussion of that effort can be found at d:WD:MBTF.

Disease

 * Existing template: Infobox disease
 * Prototype template: Infobox_disease/sandbox2
 * Proposed fields to add/maintain:

Examples

 * Cystic fibrosis: single OMIM entry, no phenotypic series
 * Sly syndrome: matches a single OMIM entry in a broader phenotypic series
 * Sanfilippo syndrome: matches multiple OMIM entries, a subset of a phenotypic series
 * Coenzyme Q10 deficiency: matches multiple OMIM entries comprising an entire phenotypic series
 * Melanoma: complex disease with multiple OMIM matches?

Drug/Compound

 * Existing template: Drugbox
 * Prototype template: Drugbox/sandbox2
 * Proposed fields to add/maintain:

Data sources

 * Drugbank (though note possible data quality issues with brand/trade names )
 * PubChem (though note errors in how polymers are handled )
 * Freebase (e.g., https://www.freebase.com/m/0hqvq1s), though ideally we work back to freebase's sources
 * NDF-RT (Description FTP)

Genes/Proteins

 * Existing template: GNF Protein box
 * Prototype template: GNF Protein box/sandbox2
 * Proposed fields to add:
 * Links to relevant disease (with evidence and/or effect sizes)
 * Links to relevant drugs/compounds