User:Quantum7/Structural alignment software

This userspace fork of Structural alignment software adds a column documenting whether the software is sequence-order independent.

This list of structural comparison and alignment software is a compilation of software tools and web portals used in pairwise or multiple structural comparison and structural alignment.

Structural comparison and alignment
Key map:
 * Class:
 * Cα -- Backbone Atom (Cα) Alignment;
 * AllA -- All Atoms Alignment;
 * SSE -- Secondary Structure Elements Alignment;
 * Seq -- Sequence-based alignment
 * Pair -- Pairwise Alignment (2 structures *only*);
 * Multi -- Multiple Structure Alignment (MStA);
 * C-Map -- Contact Map
 * Surf -- Connolly Molecular Surface Alignment
 * SASA -- Solvent Accessible Surface Area
 * Dihed -- Dihedral Backbone Angles
 * PB -- Protein Blocks


 * Flexible:
 * No -- Only rigid-body transformations are considered between the structures being compared.
 * Yes -- The method allows for some flexibility within the structures being compared, such as movements around hinge regions.


 * Non-topological:
 * No -- The sequence order within the aligned regions is preserved
 * Yes -- Alignments may require changes in the sequence order, such as circular permutations or arbitrary rearrangements

Category:Bioinformatics software

es:Anexo:Software para alineamiento estructural