1998–99 Iraklis F.C. season

The 1999–2000 season was Iraklis' 18th straight season on the Greek first tier. Managing a lower league finish than the previous season, their biggest feat was reaching the domestic cup semi-final.

Squad

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Players who left during the season

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Managers

 * Kiril Dojcinovski: 1 July 1998 – 13 October 1998
 * Mats Jingblad: 13 October 1998 – 30 June 1999