2009–10 Estonian Cup

2009–10 Estonian Cup was the twentieth season of the Estonian football knockout tournament organized by Estonian Football Association. Winners of the cup qualified for the second qualifying round of the 2010–11 UEFA Europa League. The defending champions were Flora Tallinn.

Clubs participating

 * A&A Kinnisvara
 * aaMeraaS
 * Ajax Lasnamäe
 * Alko
 * Aspen
 * Atletik
 * Atli, 2
 * EBS
 * Elva, 2
 * Esteve
 * Eston Villa
 * Fauna
 * Flora Järva-Jaani
 * Flora Rakvere
 * Flora Tallinn, 2
 * Ganvix
 * Guwalda
 * Haiba
 * Hansa Utd
 * HansaNet.ee
 * HaServ
 * Hell Hunt
 * Igiliikur
 * Jalgpallihaigla
 * Kadakas
 * Kaitseliit, 2
 * Kalju, 2, 3
 * Keskerakond, 2
 * Kristiine
 * Koeru
 * Kose
 * Kotkad
 * Kuressaare, 2, 3
 * Legion
 * Levadia
 * Lootos
 * Lootus
 * Maaülikool
 * Metec
 * Metropool
 * Navi
 * Nõmme Utd
 * Noorus 96
 * Olympic
 * Orbiit
 * Otepää
 * Paide, 2
 * Piraaja
 * Premium, 2
 * Püsivus
 * Quattromed
 * Rada, 2
 * Reaal
 * Reliikvia
 * Saue
 * Sillamäe Kalev, 2
 * Soccernet
 * Tabasalu, 2
 * Tabivere
 * Tallinna Kalev
 * Tamme Auto, 2
 * Tammeka, 2
 * Tapa
 * Toompea, 2
 * Trans
 * Tulevik, 2
 * Twister
 * Velldoris
 * Võru
 * Warrior

Teams with bye
Levadia, Flora II, Otepää, Noorus 96, Esteve, Olympic, Hell Hunt, Keskerakond, Toompea, Quattromed, Metec, Püsivus, Keskerakond II, Kalev Tallinn, Piraaja, Twister, Tammeka, Flora, aaMeraaS, Aspen, Toompea 1994, Soccernet, Eston Villa, Kuressaare, Elva II, HansaNet.ee, Tabasalu, A&A Kinnisvara, Rada II, Tamme Auto, Velldoris, Orbiit, Lootos, Rada, Elva, Nõmme United, Koeru, Navi, Kristiine, FCF Järva-Jaani.