2012–13 Querétaro F.C. season

The 2012–13 Querétaro season was the 66th professional season of Mexico's top-flight football league. The season is split into two tournaments—the Torneo Apertura and the Torneo Clausura—each with identical formats and each contested by the same eighteen teams. Querétaro began their season on July 21, 2012 against León, Querétaro played their homes games on Saturdays at 5:00pm local time. Querétaro was relegated to the Ascenso MX (second professional level of the Mexican football league system) due to being last place in the relegation percentage table. Querétaro did not qualify to the final phase in either the Apertura or Clausura tournament.

Clausura 2013 results
Querétaro did not qualify to the Final Phase due to being relegated