Acid-fastness

Acid-fastness is a physical property of certain bacterial and eukaryotic cells, as well as some sub-cellular structures, specifically their resistance to decolorization by acids during laboratory staining procedures. Once stained as part of a sample, these organisms can resist the acid and/or ethanol-based decolorization procedures common in many staining protocols, hence the name acid-fast.

The mechanisms of acid-fastness vary by species although the most well-known example is in the genus Mycobacterium, which includes the species responsible for tuberculosis and leprosy. The acid-fastness of Mycobacteria is due to the high mycolic acid content of their cell walls, which is responsible for the staining pattern of poor absorption followed by high retention. Some bacteria may also be partially acid-fast, such as Nocardia.

Acid-fast organisms are difficult to characterize using standard microbiological techniques, though they can be stained using concentrated dyes, particularly when the staining process is combined with heat. Some, such as Mycobacteria, can be stained with the Gram stain, but they do not take the crystal violet well and thus appear light purple, which can still potentially result in an incorrect gram negative identification.

The most common staining technique used to identify acid-fast bacteria is the Ziehl–Neelsen stain, in which the acid-fast species are stained bright red and stand out clearly against a blue background. Another method is the Kinyoun method, in which the bacteria are stained bright red and stand out clearly against a green background. Acid-fast Mycobacteria can also be visualized by fluorescence microscopy using specific fluorescent dyes (auramine-rhodamine stain, for example).

Some acid-fast staining techniques

 * Ziehl–Neelsen stain (classic and modified bleach types)
 * Kinyoun stain
 * For color blind people (or in backgrounds where detecting red bacteria is difficult), Victoria blue can be substituted for carbol fuchsin and picric acid can be used as the counter stain instead of methylene blue, and the rest of the Kinyoun technique can be used.
 * Various bacterial spore staining techniques using Kenyon e.g.
 * Moeller's method
 * Dorner's method (acid alcohol decolorizer) without the Schaeffer–Fulton modification (decolorize by water)
 * Detergent method, using Tergitol 7, nonionic polyglycol ether surfactants type NP-7
 * Fite stain
 * Fite-Faraco stain
 * Wade Fite stain
 * Ellis and Zabrowarny stain (no phenol/carbolic acid)
 * Auramine-rhodamine stain
 * Auramine phenol stain

Notable acid-fast structures
Very few structures are acid-fast; this makes staining for acid-fastness particularly useful in diagnosis. The following are notable examples of structures which are acid-fast or modified acid-fast:
 * All mycobacteria – M. tuberculosis, M. leprae, M. smegmatis and atypical Mycobacterium
 * Actinomycetes (especially some aerobic ones) with mycolic acid in their cell wall (note Streptomyces do NOT have); not to be confused with Actinomyces, which is a non-acid-fast genus of actinomycete
 * Nocardia (weakly acid-fast; resists decolorization with weaker acid concentrations)
 * Rhodococcus
 * Gordonia (an actinomycete)
 * Tsukamurella
 * Dietzia
 * Head of sperm
 * Bacterial spores, see Endospore
 * Legionella micdadei
 * Certain cellular inclusions e.g.
 * Cytoplasmic inclusion bodies seen in
 * Neurons in layer 5 of cerebral cortex neuronal ceroid lipofuscinosis (Batten disease).
 * Nuclear inclusion bodies seen in
 * Lead poisoning
 * Bismuth poisoning.
 * Oocysts of some coccidian parasites in faecal matter, such as:
 * Cryptosporidium parvum,
 * Isospora belli
 * Cyclospora cayetanensis.
 * A few other parasites:
 * Sarcocystis
 * Taenia saginata eggs stain well but Taenia solium eggs don't (can be used to distinguish)
 * Hydatid cysts, especially their "hooklets" stain irregularly with ZN stain but emanate bright red fluorescence under green light, and can aid detection in moderately heavy backgrounds or with scarce hooklets.
 * Fungal yeast forms are inconsistently stained with Acid-fast stain which is considered a narrow spectrum stain for fungi. In a study on acid-fastness of fungi, 60% of blastomyces and 47% of histoplasma showed positive cytoplasmic staining of the yeast-like cells, and Cryptococcus or candida did not stain, and very rare staining was seen in Coccidioides endospores.

Online protocol examples

 * Ziehl–Neelsen protocol (PDF format).
 * Alternate Ellis & Zabrowarny method for staining AFB.