List of FC Bayern Munich II seasons

A season-by-season record of FC Bayern Munich II.

Key
Key to league record:
 * Pld = Matches played
 * W = Matches won
 * D = Matches drawn
 * L = Matches lost
 * GF = Goals for
 * GA = Goals against
 * Pts = Points
 * Pos = Final position
 * PO = Play-offs
 * Avg. Att. = Average home attendance

Key to rounds:
 * R1 = Round 1
 * R2 = Round 2
 * R3 = Round 3
 * QF = Quarter-finals
 * SF = Semi-finals
 * RU = Runners-up
 * W = Winners