List of bioinformatics software

The list of bioinformatics software tools can be split up according to the license used:
 * List of proprietary bioinformatics software
 * List of open-source bioinformatics software

Alternatively, here is a categorization according to the respective bioinformatics subfield specialized on:
 * Sequence analysis software
 * List of sequence alignment software
 * List of alignment visualization software
 * Alignment-free sequence analysis
 * De novo sequence assemblers
 * List of gene prediction software
 * List of disorder prediction software
 * List of Protein subcellular localization prediction tools
 * List of phylogenetics software
 * List of phylogenetic tree visualization software
 * Category:Metagenomics_software
 * Structural biology software
 * List of molecular graphics systems
 * List of protein-ligand docking software
 * List of RNA structure prediction software
 * List of software for protein model error verification
 * List of protein secondary structure prediction programs
 * List of protein structure prediction software
 * Category:Molecular dynamics software
 * Structural alignment software
 * Other
 * Compression of genomic sequencing data
 * Bioinformatics workflow management system
 * List of genetic engineering software
 * List of systems biology visualization software
 * List of systems biology modelling software
 * 2D gel analysis software
 * List of mass spectrometry software