1999 US Open – Men's doubles

Sandon Stolle and Cyril Suk were the defending champions, but Stolle competed with Wayne Black, while Suk competed with Donald Johnson this year. Suk and Johnson were defeated by Stolle and Black in the third round, while Stolle and Black were defeated by Andrei Olhovskiy and David Prinosil in the quarterfinals.

Alex O'Brien and Sébastien Lareau won the title, defeating Indian first seeds Mahesh Bhupathi and Leander Paes in the final, 7–6(9–7), 6–4.

Seeds
• # 🇮🇳 Mahesh Bhupathi / 🇮🇳 Leander Paes (final)

• # Paul Haarhuis / 🇺🇸 Jared Palmer (first round)

• # 🇦🇺 Todd Woodbridge / 🇦🇺 Mark Woodforde (quarterfinals)

• # David Adams /  John-Laffnie de Jager (second round)

• # 🇫🇷 Olivier Delaître / 🇫🇷 Fabrice Santoro (second round, withdrew)

• # 🇦🇺 Sandon Stolle / Wayne Black (quarterfinals)

• # 🇸🇪 Jonas Björkman / Byron Black (semifinals)

• # Ellis Ferreira / 🇺🇸 Rick Leach (second round)

• # Mark Knowles / 🇨🇦 Daniel Nestor (first round)

• # 🇷🇺 Yevgeny Kafelnikov / 🇨🇿 Daniel Vacek (first round)

• # 🇺🇸 Alex O'Brien / 🇨🇦 Sébastien Lareau (champions)

• # 🇺🇸 Donald Johnson / 🇨🇿 Cyril Suk (third round)

• # Goran Ivanišević / 🇺🇸 Jeff Tarango (first round)

• # 🇸🇪 Nicklas Kulti / 🇸🇪 Mikael Tillström (first round)

• # 🇺🇸 Justin Gimelstob / 🇺🇸 Richey Reneberg (third round)

• # 🇨🇿 Jiří Novák / 🇨🇿 David Rikl (third round)